@article {11851,
	title = {Environmental hazard inventory: coastal Lincoln County, OR},
	year = {Undated},
	note = {Includes charts and maps. Photocopy of original. },
	month = {[1970s]},
	pages = {67 p.},
	address = {Corvallis, OR  },
	keywords = {Alsea River, coastal hazards, Depoe Bay, erosion, flooding, landslides, Salmon River, Siletz River, Yachats River, Yaquina River}
}
@article {83222,
	title = {Coherence among Oregon Coast coho salmon populations highlights increasing relative importance of marine conditions for productivity},
	journal = {Fisheries Oceanography},
	volume = {32},
	number = {3},
	year = {2023},
	note = {Anadromous fish like salmon have to live in two worlds:  freshwater and the ocean. The scales of these two worlds are quite different: the freshwater environment works at the scale of a single stream, and environmental changes or stressors at the stream level affect a single population of fishes.  On the other hand, oceanic changes or stressors cam affect broad regions or entire evolutionary significant units. By analyzing stock recruitment data for about sixty years along the Oregon Coast, some patterns become clear.  Over this period, there have been significant changes in how fisheries are managed, from riparian buffers in forested lands to adding large woody debris to denuded streams. Despite these changes, it seems that oceanic conditions, especially the North Pacific Gyre Oscillation, which has dominated the marine environment since 1990, are determining population levels, rather than conservation efforts at the stream level. {\textquotedblleft}If Oregon Coast coho salmon populations become more synchronous, managers can expect to face new challenges driven by reductions in the population portfolio effect and increasingly variable marine conditions due to climate change{\textquotedblright} (from the Abstract).},
	month = {2023,, May},
	pages = {p.293-310},
	keywords = {Alsea River, Beaver Creek, climate, Coho salmon = Oncorhynchus kisutch, ecosystem health, mathematical modeling, North Pacific Gyre Oscillation, Oregon Coast, Pacific Decadal Oscillation, population biology, Productivity, Salmon River Estuary, Siletz River, Siuslaw River, Umpqua River, Yaquina River},
	doi = {https://doi.org/10.1111/fog.12630 },
	author = {Davis, Melanie J. and Anthony, James and Ward, Eric J. and Firman, Julie and Lorion, Christopher}
}
@article {83208,
	title = {Earthquake and tsunami impact analysis for coastal Lincoln County, Oregon},
	volume = {no.O-21-02},
	year = {2021},
	note = {This FEMA-funded report describes the methods and results of a natural hazard risk assessment performed by the Department of Geology and Mineral Industries for Lincoln County communities.{\textquotedblright} The purpose of this project is to provide communities within the study area a detailed risk assessment of the natural hazards that affect them to enable them to compare hazards and act to reduce their risk. The risk assessment contained in this project quantifies the impacts of natural hazards to these communities and enhances the decision-making process in planning for disaster. We arrived at our findings and conclusions by completing three main tasks: compiling an asset database, identifying and using best available hazard data, and performing natural hazard risk assessment{\textquotedblright} (from the Executive Summary). Detailed reports on each community{\textquoteright}s response to a major earthquake and tsunami.},
	pages = {117p.},
	institution = {Oregon. Department of Geology and Mineral Industries},
	address = {Portland, Or.},
	keywords = {coastal hazards, Depoe Bay (Or.), earthquakes, flooding, landslides, Lincoln City (Or.), Lincoln County (Or.), Newport (Or.), Otis (Or.), Rose Lodge (Or.), Siletz (Or.), South Beach (Or.), Toledo (Or.), tsunamis, Waldport (Or.), Yachats (Or.)},
	url = {https://www.oregongeology.org/pubs/ofr/p-O-21-02.htm },
	author = {Allan, Jonathan C. and O{\textquoteright}Brien, Fletcher E.}
}
@article {83100,
	title = {Management of anadromous lampreys: Common threats, different approaches},
	journal = {Journal of Great Lakes Research. Supplement},
	volume = {47 },
	number = {Sup.1  },
	year = {2021},
	note = {This review article summarizes what is known about the statuses of many lamprey species around the world.  The usual suspects, primarily human activity and climate change get the blame for most population declines.  Management of the Pacific lamprey is a bright spot, largely due to the efforts and advocacy of Native Americans.  The Western river lamprey, on the other hand, suffers from inadequate research, which is needed in order to support conservation.},
	month = {2021, Dec.},
	pages = {S129-S146},
	keywords = {Alsea River, Beaver Creek, climate, Cummins Creek, dams, depleted populations, human impacts, land use, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), River lamprey = Lampetra ayresi, Salmon River,, Siletz River, Siuslaw River, Tenmile Creek, Umpqua River, water use, Yachats River, Yaquina River},
	doi = {https://doi.org/10.1016/j.jglr.2020.09.005 },
	author = {Clemens, Benjamin J. and Arakawa, Hiroaki and Baker, Cindy and Coghian, Stephen and Kucheryavyy, Aleksandr and Lampman, Ralph and Lan{\c c}a, Maria Jo{\~a}o and Mateus, Catarina Sofia and Miller, Allison and Nazari, Hassan and Peque{\~n}o, Germ{\'a}n and Sutton, Trent M. and Yanai, Seiji}
}
@article {83034,
	title = {Final Coastal, Columbia, and Snake Conservation Plan for Lampreys in Oregon},
	year = {2020},
	note = {The conservation plan described in this document is intended to {\textquotedblleft}identify, acknowledge, and support actions needed to conserve lampreys in the service of the mission of the Oregon Department of Fish and Wildlife{\textquotedblright} (p.3) It gives management strategies and identifies areas needing monitoring, research and evaluation. ODFW acknowledges that it lacks the resources to fully address factors limiting lamprey populations, and will need to coordinate with other groups working on natural resource issues.},
	pages = {192 p.},
	institution = {Oregon Dept. of Fish and Wildlife},
	address = {Salem, Or.},
	keywords = {Alsea River Basin, climate, conservation plans, dams, depleted populations, environmental law and policy, habitats, human impacts, natural resource management, Pacific brook lamprey = Lampetra pacifica, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), population biology, predation, River lamprey = Lampetra ayresi, Siletz River Basin, Siuslaw River Basin, streamflow, Umpqua River Basin, water temperature, Western brook lamprey = Lampetra richardsoni, Yachats River Basin, Yaquina River Basin},
	url = {https://www.dfw.state.or.us/fish/CRP/docs/coastal_columbia_snake_lamprey/CPL\%20-\%20Final\%202-14-20.pdf },
	author = {Clemens, Benjamin J. and Anlauf, Kara Janaye and Weeber, Matt and Stahl, Tom and Oregon. Dept. of Fish and Wildlife,}
}
@article {83040,
	title = {GIS data and method for determining maximum-considered local and distant tsunami wave arrival data for the Oregon coast},
	volume = {no.O-20-09},
	year = {2020},
	note = {This is a highly technical report showing the methodology used to develop maps giving arrival times for local and distant earthquake-generated tsunamis.  The report discusses issues leading to misleading or untrue wave arrival times and the techniques used to correct these problems.},
	pages = {23 p.},
	institution = {Oregon Department of Geology and Mineral Industries},
	address = {Portland, Or.},
	keywords = {coastal hazards, earthquakes, geology, Oregon Coast, tsunamis},
	url = {https://www.oregongeology.org/pubs/ofr/O-20-09/O-20-09_report.pdf },
	author = {Gabel, Laura L. S. and O{\textquoteright}Brien, Fletcher and Allan, Jonathan C.}
}
@article {83207,
	title = {Natural hazard risk report for Lincoln County, Oregon, including the Cities of Lincoln City, Depoe Bay, Siletz, Newport, Toledo, Waldport, and Yachats, and the Confederated Tribes of Siletz Indians, and the unincorporated communities of Otis-Rose Lodge...},
	volume = {no.O-20-11},
	year = {2020},
	note = {This FEMA-funded report describes the methods and results of a natural hazard risk assessment performed by the Department of Geology and Mineral Industries for Lincoln County communities.{\textquotedblright} The purpose of this project is to provide communities within the study area a detailed risk assessment of the natural hazards that affect them to enable them to compare hazards and act to reduce their risk. The risk assessment contained in this project quantifies the impacts of natural hazards to these communities and enhances the decision-making process in planning for disaster. We arrived at our findings and conclusions by completing three main tasks: compiling an asset database, identifying and using best available hazard data, and performing natural hazard risk assessment{\textquotedblright} (from the Executive Summary). Detailed reports on each community{\textquoteright}s response to a major earthquake and tsunami.  The full title of this report is:  Natural hazard risk report for Lincoln County, Oregon, including the Cities of Lincoln City, Depoe Bay, Siletz, Newport, Toledo, Waldport, and Yachats, and the Confederated Tribes of Siletz Indians, and the unincorporated communities of Otis-Rose Lodge, Salishan-Lincoln Beach, Otter Rock, Seal Rock-Bayshore, and Wakonda Beach.},
	pages = {99p.},
	institution = {Oregon. Department of Geology and Mineral Industries},
	address = {Portland, Or.},
	keywords = {coastal hazards, Depoe Bay (Or.), earthquakes, erosion, landslides, Lincoln City (Or.), Lincoln County (Or.), looding, Newport (Or.), Otis (Or.), Rose Lodge (Or.), Siletz (Or.), South Beach (Or.), Toledo (Or.), tsunamis, Waldport (Or.), Yachats (Or.)},
	url = {https://www.oregongeology.org/pubs/ofr/O-20-11/O-20-11_report.pdf },
	author = {Williams, Matt C. and Appleby, Christina A. and Anthony, Lowell H. and O{\textquoteright}Brien, Fletcher E.}
}
@article {82626,
	title = {A review of habitat connectivity research for Pacific salmon in marine, estuary, and freshwater environments},
	journal = {Journal of the American Water Resources Association},
	volume = {55},
	number = {2},
	year = {2019},
	note = {This article reviews recent literature on habitat connectivity {\textquotedblleft}within and among freshwater, estuary and marine environments, and the role of local adaptation to conditions in each of them{\textquotedblright} (p.434).  Most available research on habitat connectivity in salmonids focuses on the freshwater environment, and more research is needed on estuarine and marine environments.  Interestingly, more published research in this area seems to have taken place after 2012.  The restoration of salt marsh habitat in the Salmon River estuary is mentioned, as is the vulnerability of Oregon estuaries to climate change.},
	month = {2019, Apr. },
	pages = {p.430-441},
	keywords = {Chinook salmon = Oncorhynchus tshawytscha, chum salmon  = Oncorhynchus keta, climate change, Coho salmon = Oncorhynchus kisutch, geographic distribution, habitats, Masu salmon = Oncorhynchus masou, Pink salmon (humpback) = Oncorhynchus gorbuscha, Salmon River Estuary},
	doi = {https://doi.org/10.1111/1752-1688.12708},
	author = {Flitcroft, R. L. and Arismendi, I. and Santelmann, M. V.}
}
@article {83011,
	title = {Expansion and systematics redefinition of the most threatened freshwater mussel family, the Margaritiferidae},
	journal = {Molecular Phylogenetics and Evolution},
	volume = {127},
	year = {2018},
	note = {In this article, the evolution, distribution and taxonomy of the freshwater pearl mussel family, Margaritiferidae, is explored. Fossils as well as genetic data were used to model the diversification of this family.  Maps, charts.},
	month = {2018, Oct.},
	pages = {p.98-118},
	keywords = {aquatic invertebrates, bivalves, evolution, general, genetics, geographic distribution, molluscs, morphology, mussels, phylogeny, taxonomy},
	doi = {https://doi.org/10.1016/j.ympev.2018.04.041 },
	author = {Lopes-Lima, Manuel and Bolotov, Ivan N. and Do, Van Tu and Aldridge, David C. and Fonseca, Miguel M. and Gan, Han Ming and Gofarov, Mikhail Y. and Kondakov, Alexander V. and Pri{\'e}, Vincent and Sousa, Ronaldo and Varandas, Simone and Vikhrev, Ilya V. and Teixeira, Amilcar and Wu, Rui-Wen and Wu, Xiaoping and Zieritz, Alexandra and Froufe, Elsa and Bogan, Arthur E.}
}
@article {82601,
	title = {Population viability improves following termination of coho salmon hatchery releases},
	journal = {North American Journal of Fisheries Management},
	volume = {38},
	number = {1},
	year = {2018},
	note = {Hatchery salmon can interbreed with wild salmon, and damage the viability of the native fish run.  In recent years, fishery managers have experimented with closing hatcheries.  This was the case with the coho salmon hatchery on the Salmon River, which closed in 2007.  What happened?  This paper reports on what is known so far, and the news is good. {\textquotedblleft}Although hatchery-origin spawners previously had accounted for most of the adults returning to the Salmon River, the naturally produced population did not collapse, and two viability metrics improved significantly after the Coho Salmon hatchery program ended: (1) adult abundance increased and (2) spawn timing expanded and moved closer to the historical timing.{\textquotedblright} (from the Abstract) Hatchery closure seems to be an effective strategy for promoting wild populations, but long-term monitoring is still needed.},
	month = {2018, Feb},
	pages = {p.39-55},
	keywords = {Salmon River estuary, Coho salmon = Oncorhynchus kisutch, hatcheries, hatchery salmonids, wild salmonids,},
	doi = {https://doi.org/10.1002/nafm.10029 },
	author = {Jones, Kim K. and Cornwell, Trevan J. and Bottom, Daniel L. and Stein, Staci and Anlauf-Dunn, Kara J.}
}
@article {83063,
	title = {Winter habitat condition of Oregon coast coho salmon populations, 2007-2014},
	volume = {no.2018-01},
	year = {2018},
	note = {Winter habitat turns out to be an important, indeed, a limiting factor in coho salmon survival.  Nicely complex habitat offers refuges that enable juvenile coho to survive winter freshets as well as providing {\textquotedblleft}a large freshwater survival buffer that may help coho persist though extended periods of poor ocean survival{\textquotedblright} (p.2). It is troubling to note that agricultural land, private forest land and urban lands had the greatest lack of complexity, highlighting the need for more education and other efforts in these areas.},
	pages = {30 p.},
	institution = {ODFW Aquatic Inventories Project},
	address = {Salem, Or.},
	keywords = {Alsea River, American beaver = Castor canadensis, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, geography, geology, habitats, hydrology, land use, Nehalem River, Nestucca River, population count, Salmon River, sediments, Siletz River, Siuslaw River, Tillamook Bay, Umpqua River, Yaquina River},
	url = {https://tinyurl.com/3nsruf33 },
	author = {Strickland, Matt J. and Anlauf-Dunn, Kara and Jones, Kim and Stein, Charles}
}
@article {76981,
	title = {Coastal flood hazard study, Lincoln County, Oregon},
	volume = {no.O-15-06},
	year = {2015},
	note = {This is a technical document giving the factors and assumptions behind the flood hazard study. There are some colored maps and discussions of some sites, but it does not give the final maps.  {\textquotedblleft}The objective of the Lincoln County coastal flood hazard project is to develop a digital flood insurance rate map (DFIRM) and flood insurance study (FIS) report for Lincoln County, Oregon. . . DOGAMI has been contracted to perform detailed coastal flood hazard studies for the entire length of the Lincoln County shoreline of the Pacific Ocean.{\textellipsis}{\textquotedblright} (p.1)},
	pages = {351 p.},
	institution = {Oregon Dept. of Geology and Mineral Industries},
	address = {Portland, Or.},
	keywords = {Alsea Bay, Alsea Spit, climate, coastal hazards, Depoe Bay, erosion, flooding, Fogarty Creek, geography, geology, Lincoln County (Or.), paleosciences, precipitation, Rocky Creek, Salmon River Estuary, Siletz Bay, Siletz Spit, Waldport (Or.), Whale Cove, Yachats (Or.), Yachats River, Yaquina Bay, Yaquina Head},
	url = {https://www.oregongeology.org/pubs/ofr/O-15-06_Lincoln.pdf },
	author = {Allan, Jonathan C. and Ruggiero, Peter and Cohn, Nick and Garcia, Gabriel and O{\textquoteright}Brien, Fletcher E. and Stimely, Laura L. and Roberts, Jed T.}
}
@inbook {11876,
	title = {Lower Columbia and Oregon coast},
	booktitle = {Oregon archaeology},
	year = {2011},
	note = {A contemporary overview of the archeology of the Oregon Coast.Well illustrated.},
	pages = {p.210-283},
	publisher = {Oregon State University Press},
	organization = {Oregon State University Press},
	chapter = {Ch. 4},
	address = {Corvallis, Or.},
	keywords = {archeology, Bandon Sandspit, bob Creek, Boiler Bay, Cape Perpetua, Coos Bay, Coquille River, Graveyard Point, Half Moon Weir, K{\textquoteright}ama{\textquoteright}cdun, Necanicum River, Neptune, Netarts Sandspit, Palmrose, Par-Tee, Pistol River, Seal Rock, Siltcoos Lake, Siuslaw River, Spencer Bridge, Tahkenitch Lake, Umpqua River, Umpqua-Eden, Whale Cove, Yaquina Falls, Yaquina Head, Yaquina River},
	author = {Aikens, C. Melvin and Connolly, Thomas J. and Jenkins, Dennis L.}
}
@inbook {51326,
	title = {Impacts of climate change on Oregon{\textquoteright}s coasts and estuaries},
	booktitle = {Oregon Climate Assessment Report},
	year = {2010},
	note = {This is Chapter 6 of the Oregon Climate Assessment Report. Predicts {\textquotedblleft}Increased winter{\textendash}early spring flow of coastal rivers and creeks and reduced flow during summer{\textquotedblright} for the Umpqua River (p.242)},
	pages = {p.211-268},
	publisher = {Oregon State University. College of Oceanic and Atmospheric Sciences. Oregon Climate Change Research Institute,},
	organization = {Oregon State University. College of Oceanic and Atmospheric Sciences. Oregon Climate Change Research Institute,},
	address = {Corvallis, Or.},
	keywords = {Alsea Bay, Alsea Spit, bacteria, Bayocean Spit, climate change, climate precipitation, coastal hazards, Columbia River estuary, Coos Bay, dissolved oxygen, El Nino, erosion, estuaries, geology, landslides, Nehalem Bay, Nehalem Spit, Neskowin (Or.), Netarts Bay, ocean acidification, Rockaway Beach, salinity, Salmon River Estuary, sea level, Siletz Bay, Tillamook Bay, water temperature, wave heights, Yachats River, Yaquina Bay},
	url = {https://digital.osl.state.or.us/islandora/object/osl\%3A637577},
	author = {Ruggiero, Peter and Brown, Cheryl A. and Komar, Paul D. and Allan, Jonathan C. and Reusser, Deborah A. and Lee II, Henry},
	editor = {Dello, Kathie and Mote, Philip W.}
}
@article {26636,
	title = {The Coastal Connection: Assessing Oregon Estuaries for Conservation Planning},
	year = {2008},
	note = {A good overview of the concepts used for evaluating the health of estuaries in Oregon. Identifies data sources, standards.  Good bibliography.},
	month = {2008. Apr.},
	pages = {48 p.},
	institution = {The Nature Conservancy in Oregon},
	address = {Portland, Or.},
	keywords = {Alsea Bay, Beaver Creek, Chetco River, coastal hazards, Coos Bay, Coquille River, Depoe Bay, eelgrass = Zostera marina, erosion, general ecosystem description, habitats, hydrology, introduced species, landslides, marshes, Necanicum River, Nehalem River, Nestucca Bay, Netarts Bay, Rogue River, salinity, Salmon River Estuary, Sand Lake, sediments, Siletz Bay, Siltcoos Creek, Siuslaw River, Sixes River, Tahkenitch Creek, Tenmile Creek, Tillamook Bay, water quality, Yachats River, Yaquina Bay},
	url = {https://www.dfw.state.or.us/conservationstrategy/docs/conservation_planning_1110/TNC_report.pdf},
	author = {Aldous, Allison and Brown, Jenny and Elseroad, Adrien and The Nature Conservancy in Oregon}
}
@article {83220,
	title = {Contaminant exposure in outmigrant juvenile salmon from Pacific Northwest estuaries of the United States},
	journal = {Environmental Monitoring and Assessment},
	volume = {124},
	number = {1-3},
	year = {2007},
	note = {When juvenile salmonids migrate downstream towards the ocean, they can encounter and absorb harmful chemicals such as DDT, polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs) and pesticides. The authors of this paper measured harmful chemicals in tissues of juvenile salmonids, and in their prey.  They also measured stomach contents of salmon from estuaries and hatcheries. Results were not surprising:  industrial estuaries such as the Columbia River, Coos Bay and Yaquina Bay showed high contaminant exporsure (Yaquina Bay was high in PCBs in Chinook salmon), while natural estuaries like the Salmon and Elk River estuaries, had low exposures to harmful chemicals. Some of the conservation estuaries, including Alsea Bay, had relatively high exposures to contaminants. . Juvenile Chinook were more vulnerable than coho salmon.},
	pages = {p.167-194},
	keywords = {Alsea Bay, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Columbia River, Coos Bay, Coquille River estuary, DDT, Elk River, juvenile fish, migration, pesticides, Salmon River, Salmon River Hatchery, Tillamook Bay, water pollution, Yaquina Bay},
	doi = {https://doi.org/10.1007/s10661-006-9216-7 },
	author = {Johnson, Lyndal L. and Ylitalo, Gina M. and Arkoosh, Mary R. and Kagley, Anna N. and Stafford, Coral and Bolton, Jennie L. and Buzitis, Jon and Anulacion, Bernadita F. and Collier, Tracy K.}
}
@article {12051,
	title = {Ecological and water quality consequences of nutrient addition for salmon restoration in the Pacific Northwest},
	journal = {Frontiers in ecology and the environment},
	volume = {4},
	number = {1},
	year = {2006},
	note = {In some places, salmon carcasses are being dumped or placed near streams in an attempt to replicate the natural streamside nutrient cycle from the days when salmon were more abundant. The authors call for more careful studies of this practice. Includes map of the Salmon River watershed showing the relationship between stream nitrogen export and red alder cover.},
	pages = {p.18-26},
	keywords = {nitrate-nitrite, nitrogen, nutrient cycles, Oncorhynchus spp., phosphorus, red alder = Alnus rubra, Salmon River Basin},
	doi = {10.1890/1540-9295(2006)004[0018:EAWQCO]2.0.CO;2},
	author = {Compton, Jane E. and Andersen, Christian P. and Phillips, Donald L. and Brooks, J. Renee and Johnson, Mark G. and Church, M. Robbins and Hogsett, William E. and Cairns, Michael A. and Rygiewicz, Paul T. and McComb, Branda C. and Shaff, Courtney D.}
}
@article {26371,
	title = {Hydrogeomorphic (HGM) Assessment Guidebook for Tidal Wetlands of the Oregon Coast, Part 1: Rapid Assessment Method},
	year = {2006},
	note = {"Produced for the Coos Watershed Association, Oregon Department of State Lands, and U.S.E.P.A.-Region 10." Outlines a method for assessing the conditions of Oregon coastal wetlands and estuaries. Short bibliography, with a more extensive bibliography in part 2 of this handbook. Many color photographs of Oregon wetlands.},
	pages = {85 p.},
	institution = {Coos Watershed Association},
	address = {Charleston, Or.},
	keywords = {aquatic invertebrates, aquatic vegetation, birds, estuarine dynamics, flooding, general, human impacts, salinity, sediments, species list, statistics, terrestrial mammals, tidal processes, water quality, wetland delineation, wetland vegetation},
	url = {https://digital.osl.state.or.us/islandora/object/osl\%3A14026},
	author = {Adamus, Paul R.}
}
@article {12131,
	title = {Science Review and Data Analysis for Tidal Wetlands of the Oregon Coast. Part 2 of a Hydrogeomorphic Guidebook. Report to Coos Watershed Association, US Environmental Protection Agency, and Oregon Dept. of State Lands, Salem},
	year = {2005},
	note = {"This document describes the development and technical basis for the hydrogeomorphic (HGM) method for assessing tidal wetlands of the Oregon coast... Drawing from approximately 500 published sources and databases, this document reviews scientific literature on tidal wetland functions, especially as it pertains to the presented HGM method and the Pacific Northwest. Data are summarized on dozens of variables that were measured or estimated in 120 tidal wetlands during summer 2003." (From Summary, p.i.)  Includes details about the method and scoring.  Has bibliography for all three volumes.},
	pages = {216 p. .},
	keywords = {aquatic invertebrates, aquatic vegetation, birds, estuarine dynamics, flooding, human impacts, salinity, sediments, species list, statistics, terrestrial mammals, tidal processes, water quality, wetland delineation, wetland vegetation},
	url = {https://tidalmarshmonitoring.net/pdf/Adamus2005_TidalWetlandsReviewOR.pdf},
	author = {Adamus, Paul R.}
}
@article {12141,
	title = {Updated status of federally listed ESUs of west coast salmon and steelhead},
	volume = {no.66},
	year = {2005},
	pages = {598 p.},
	institution = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service, Northwest Fisheries Science Center,},
	address = {Seattle, Wash.},
	keywords = {Alsea River, Beaver Creek, Chinook salmon = Oncorhynchus tshawytscha, chum salmon  = Oncorhynchus keta, Coho salmon =  Oncorhynchus kisutch, Coos Bay, Coquille River, depleted populations, Devil{\textquoteright}s Lake, fecundity, genetics, hatcheries, human impacts, hybridization, Necanicum River, Nehalem River, Nestucca River, population biology, population count, reproductive behavior, Rogue River, Salmon River, salmonid species, Sand Lake, Siletz River, Siuslaw River, statistical analysis, steelhead trout = Oncorhynchus mykiss, Tenmile Lake, Tillamook Bay, Umpqua River Basin, Yachats River, Yaquina River},
	url = {https://repository.library.noaa.gov/view/noaa/3413},
	editor = {Good, Thomas P. and Waples, Robin S. and Adams, Pete}
}
@article {12151,
	title = {Wetland Profiles of Oregon{\textquoteright}s Coastal Watersheds and Estuaries:  Part 3 of a Hydrogeomorphic Guidebook.  Report to Coos Watershed Association, US Environmental Protection Agency, and Oregon Depart. of State Lands, Salem.},
	year = {2005},
	note = {Bibliography is with the 2nd volume of this handbook, "Oregon Tidal Wetland Functions Literature Review \& Data." This volume summarizes the state of tidal and non-tidal wetlands on the Oregon Coast. Looks at potential stressors, water quality. Gives detailed descriptions of 3 wetlands in the Salmon River Estuary. The wetlands were assessed in 2003. The Salmon River Estuary has proportionately more tidal marsh (68\%) than any other Oregon estuary. Available through ResearchGate.},
	pages = {89 p.},
	keywords = {aquatic invertebrates, aquatic vegetation, birds, estuarine dynamics, flooding, human impacts, Mitchell Marsh, Reference Marsh, salinity, Salmon River Estuary, sediments, species list, terrestrial mammals, tidal processes, water quality statistics, wetland delineation, wetland vegetation},
	url = {https://tinyurl.com/v57pmmu},
	author = {Adamus, Paul R. and Larsen, Jennifer and Scranton, Russell}
}
@article {12161,
	title = {Great earthquakes and tsunamis of the past 2000 years at the Salmon River Estuary, Central Oregon Coast, USA},
	journal = {Bulletin of the Seismological Society of America},
	volume = {94},
	number = {4},
	year = {2004},
	note = {Examines four sets of buried soils at the entrance to the Salmon River. Definitive proof of the great tsunami of 1700; equivocal evidence of 3 earlier sudden subsidence events.},
	month = {2004, Aug.},
	pages = {p.1276-1292},
	keywords = {earthquakes, geology, paleoecology, Salmon River Estuary, tsunamis},
	doi = {10.1785/012003210},
	author = {Nelson, Alan R. and Asquith, Andrew C. and Grant, Wendy C.}
}
@book {12171,
	title = {Results of shellfish analysis from 35LNC33, a site in the Salmon River estuary, Lincoln County, Oregon},
	year = {2004},
	note = {Thesis: M.A.},
	month = {2004},
	publisher = {Portland State University, Department of Anthropology},
	organization = {Portland State University, Department of Anthropology},
	address = {Portland, OR},
	keywords = {archeology, California mussel = Mytilus californianus, prehistory},
	author = {Becker, Thomas E. and Portland State University. Department of Anthropology}
}
@article {12176,
	title = {Survey of pathogens in juvenile salmon <i>Oncorhynchus</i> spp. migrating through Pacific Northwest estuaries},
	journal = {Journal of aquatic animal health},
	volume = {16},
	number = {4},
	year = {2004},
	note = {Tracks selected pathogens in Chinook and coho salmon in Pacific Northwest estuaries from 1996-2001. Gives percentages of infected fish found in estuaries. Suggests role disease may play in salmonid ecology. Maps; charts.},
	month = {2004, Dec.},
	pages = {p.186-196},
	keywords = {Aeromonas salmonicida, Alsea Bay, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, Elk River, erythrocytic necrosis virus or erythrocytic inclusion body syndrom (EIBS/ENV), Listonella anguillarum, Nonophyetus salmincola, Renibacterium salmoninarum, Salmon River, Yaquina River, Yersinia ruckeri},
	doi = {10.1577/H03-071.1},
	author = {Arkoosh, Mary R. and Clemons, E. and Kagley, A. N. and Stafford, C. and Glass, A. C. and Jacobson, K. and Reno, P. and Myers, M. S. and Casillas, E. and Loge, F. and Johnson, L. L. and Collier, T. K.}
}
@book {83253,
	title = {Macroinvertebrates of the Pacific Northwest:  A Field Guide},
	year = {2003},
	note = {A good way to assess the health of a stream involves taking a census of its resident aquatic invertebrates. This field guide packs a lot of information into a few pages {\textendash} scientific and popular names, size, range, habitat, behavior, type of feeder, and tolerance to anthropogenic stress. Most species identified are aquatic insects. Color photographs.  The guide was originally issued as a companion to the book Stream Bugs as Biomonitors:  Guide to Pacific Northwest Macroinvertebrate Monitoring.},
	publisher = {Xerces Society},
	organization = {Xerces Society},
	chapter = {15 p.},
	address = {Portland, Or.},
	keywords = {annelids, aquatic invertebrates, bivalves, crustaceans, ecosystem health, Field guide, gastropods, identification, insects, mollusks, mussels, nematodes},
	url = {https://www.xerces.org/sites/default/files/2018-05/08-009_01_Macroinvertebrate-Field-Guide.pdf},
	author = {Adams, Jeff and Vaughan, Mace and Xerces Society,,}
}
@article {12276,
	title = {Draft Oregon coastal juvenile rockfish study},
	year = {2000},
	note = {This paper describes a pilot project to develop a recruitment index for rockfish. Rockfish bear live young in the winter. "The larvae live in the plankton for three to five months before settling to the benthos, usually near some sort of structure."  Juvenile rockfish live in estuaries before migrating to the ocean. For this study, beach seines were conducted in the summer of 2000.  The Chinook salmon was the most abundant fish in the Salmon River estuary. No rockfish were found in the Salmon River. "There is limited rockfish habitat in the estuary, most of which empties at low tide leaving only riverine freshwater flow." Fifteen different fish species were collected in the Salmon River estuary.},
	pages = {18 p.},
	institution = {Oregon Dept. of Fish and Wildlife. Marine Resources Division. Estuarine Habitat},
	keywords = {Black rockfish = Sebastes melanops, Boiler Bay, Chinook salmon = Oncorhynchus tshawytscha, life history information, natural resource management, Rockfish = Sebastes spp., Salmon River Estuary, Seal Rock, species list, Yaquina Bay, Yaquina River},
	url = {https://ir.library.oregonstate.edu/concern/defaults/p2676w099},
	author = {Appy, Marcus and Collson, P. J.}
}
@article {12321,
	title = {Surviving a tsunami--lessons from Chile, Hawaii, and Japan},
	volume = {no.1187},
	year = {1999},
	note = {URL is link to revised and reprinted version of 2005.  Includes a color photograph of a bank cut from the Salmon River showing a layer of sand deposited by the 1700 tsunami on top of Native American fire pits from a fishing camp.},
	pages = {18 p.},
	institution = {U.S. Dept. of the Interior U.S. Geological Survey,},
	keywords = {archeology, earthquakes, Salmon River, sediments, tsunamis},
	url = {https://coast.noaa.gov/data/digitalcoast/pdf/tsunami-survivor-stories.pdf},
	author = {Atwater, Brian F. and Cistemas, Marco V. and Bourgeois, Joanne and Dudley, Walter C. and Hendley II, James W. and Stauffer, Peter H. (compilers)}
}
@article {12341,
	title = {Effect of pollution on fish diseases:  potential impacts on salmonid populations},
	journal = {Journal of Aquatic Animal Health},
	volume = {10},
	year = {1998},
	note = {Discusses distribution of three naturally-occurring pathogens in wild salmonids in five Oregon rivers. Many fish carry pathogens and are able to resist them, however, pollution lowers resistance to disease by weakening the immune systems.},
	pages = {182-190},
	keywords = {Alsea Bay, Chinook salmon = Oncorhynchus tshawytscha, Coos Bay, Coquille River, Elk River, erythrocytic inclusion body syndrome, erythrocytic necrosis virus, Nanophyetus salmincola, Renibacterium salmoninarum, Salmon River},
	author = {Arkoosh, Mary R. and Casillas, Edmundo and Clemons, Ethan and Kagley, Anna N. and Olson, Robert and Reno, Paul and Stein, John E.}
}
@article {49781,
	title = {Legislative Fellowship Final Report, 1995},
	year = {1995},
	note = {This document details the work done by the 1995 Oregon Sea Grant / Oregon Coastal Zone Management Association Legislative Fellow. {\textquotedblleft}The Oregon Sea Grant/OCZMA Legislative Fellowship Program began in 1987 primarily to provide students from the Oregon State University Marine Resource Management Program (MRM) with a means with which to apply academic knowledge gained in science or public policy to the real-world arena of legislative politics.{\textquotedblright}  (p.1)  The author was assigned to State Senator Stan Bunn{\textquoteright}s office, and worked for him, for Sea Grant and for OCZMA.  The document includes summaries of legislation important to coastal communities, and brief interviews with Oregon legislators.},
	month = {1995, Aug.},
	pages = {59 p.},
	institution = {Oregon Coastal Zone Management Association,},
	address = {Salem, Or. },
	keywords = {coastal hazards, Coos Bay, Coquille River estuary, dungeness crab=Metacarcinus magister (Cancer magister), earthquakes, environmental law and policy, fish screens, general, Lower Smith River, marine mammals, Pacific salmonids=Oncorhynchus spp., salmon hatcheries, tsunamis, Vincent Creek, wild salmonids},
	url = {https://ir.library.oregonstate.edu/concern/defaults/8910jz376},
	author = {Coontz, Julie and Oregon Coastal Zone Management Association and Oregon State University. Sea Grant College Program}
}
@article {12436,
	title = {Salmon River estuary hydrographic survey and analysis},
	year = {1995},
	note = {This is an engineer{\textquoteright}s review of several projects in the Salmon River area, including the Salmon Creek dike and possible dike removal, the Y Dike Ditch, Pixieland, Frazer Creek, basin lands and Knight Park.  Extensive work was done on tidal datums. Includes maps and author{\textquoteright}s notes.},
	keywords = {climate, Crowley Creek, Deer Creek, flooding, Frazer Creek, geology, hydrography, hydrology, precipitation, Salmon Creek, Salmon River, sediments, soils, streamflow, tides},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/gm80hw13k},
	author = {Coulton, Kevin G. and Crane \& Merseth and Philip Williams \& Associates and Siuslaw National Forest}
}
@article {12641,
	title = {Methane in surface waters of Oregon estuaries and rivers},
	journal = {Limnology and oceanography},
	volume = {32},
	number = {3},
	year = {1987},
	note = {Measured methane concentrations in surface waters of Oregon rivers from 1979-1982. "Results from undisturbed forest streams indicate that rivers can contain high natural levels of [methane] not attributable to pollution." (abstract)},
	pages = {p.716-722},
	keywords = {hydrology, mathematical modeling, methane, Salmon River, Salmon River Estuary, Siletz Bay, Siletz River, Yaquina Bay, Yaquina River},
	author = {de Angelis, Marie A. and Lilley, Marvin D.}
}
@article {12666,
	title = {Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Northwest) : Dungeness Crab},
	volume = {no. 82(11.63)},
	year = {1986},
	note = {This is a classic overview of the biology and life history of the Dungeness crab in the Pacific Northwest. Good bibliography, if dated.Map, charts, line drawings.},
	pages = {20 p.},
	institution = {U.S. Fish and Wildlife Service},
	address = {Washington, D.C.},
	keywords = {Alsea Bay, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos Bay, Coquille Bay, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), fecundity, general, growth, life history information, Nehalem Bay, Nestucca Bay, Netarts Bay, recreational fisheries - shellfish, reproductive behavior, Rogue River estuary, Salmon River Estuary, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Yaquina Bay},
	url = {https://apps.dtic.mil/dtic/tr/fulltext/u2/a181590.pdf},
	author = {Pauley, Gilbert B. and Armstrong, David A. and Heun, Thomas W.}
}
@article {12811,
	title = {Cultural resource overview of BLM lands in northwestern Oregon : archaeology, ethnography, history},
	volume = {no.20},
	year = {1980},
	note = {Good resource on prehistoric and historic culture of the region. Native Salmon River peoples were part of the Tillamook (p.72-78). This out-of-print publication was formerly available online.  A PDF is available by Emailing  jei@uoregon.edu for access. },
	pages = {198 p.},
	institution = {University of Oregon. Dept. of Anthropology},
	address = {Eugene, Or.},
	keywords = {Alsea River, anthropology, archeology, historical, Native Americans, Salmon River, Tillamook Bay, Yaquina River},
	author = {Minor, Rick and Beckham, Stephen Dow and Lancefield-Steeves, Phyllis E. and Toepel, Kathryn Anne},
	editor = {Aikens, C. Melvin}
}
@book {12981,
	title = {Oregon{\textquoteright}s fragile few--estuaries},
	year = {1976},
	pages = {10 p.},
	publisher = {Pacific Northwest River Basins Commission},
	organization = {Pacific Northwest River Basins Commission},
	keywords = {estuaries, general},
	author = {MacLeod, Gerald R. and American Fisheries Society. Oregon Chapter. Estuary Conservation and Development Committee, and Pacific Northwest River Basins Commission}
}
@article {12986,
	title = {A physical description of the Salmon River Estuary},
	year = {1976},
	note = {Class report for CE 572, Marine / Estuarine Water Quality Dynamics, Spring Term, 1976. Ocean Engineering Program, Oregon State University. May 14-16, 1976 students conllected continuous tidal-elevation and current data at three stations, as well as monitoring conductivity, pH, temperature and dissolved oxygen along the length of the estuary. Attempt to characterize the estuary regarding flushing, pollutant dispersal, friction effects, etc. Unpublished manuscript.},
	pages = {67 p.},
	keywords = {chemistry, flushing, hydrography, salinity, Salmon River, Salmon River Estuary, temperature, tides},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/6682x468v},
	author = {Askren, David and Hansen, Robert and Higgins, Bruce and Noble, Scott and Pratt, Robert}
}
@article {13171,
	title = {An inventory of filled lands in the Salmon River Estuary},
	year = {1972},
	institution = {Oregon. Division of State Lands},
	keywords = {human impacts, land ownership, land use, physical modifications, Salmon River},
	url = {https://ir.library.oregonstate.edu/concern/defaults/qb98mk843},
	author = {Hamilton, Stanley F. and Advisory Committee to the State Land Board,}
}
@article {54991,
	title = {Winter steelhead returns appear good},
	journal = {Oregon State Game Commission Bulletin},
	volume = {23},
	year = {1968},
	note = {Brief news item about the 1968 steelhead run.  {\textquotedblleft}Hot spot of Lincoln County was the Salmon River, with angling intensity up considerably over previous years{\textellipsis}{\textquotedblright}},
	month = {1968, Jul.},
	pages = {p.7},
	keywords = {Alsea River, catch statistics, recreational fisheries {\textendash} salmon, Salmon River, Siletz River, steelhead trout = Oncorhynchus mykiss, Umpqua River},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/wp988k86s},
	author = {Anonymous}
}
@article {76441,
	title = {Oregon fishery legislation is viewed variously by operators},
	journal = {Pacific Fisherman },
	volume = {29},
	year = {1931},
	note = {This article gives comments from Andrew J. Naterlin of Newport and Charles Feller of Marshfield on activities of the Oregon legislature affecting the fishing industry.  Includes a photograph of A. J. Naterlin. Mr. Naterlin is quoted extensively, including these remarks, {\textquotedblleft}Several good, worthy laws were enacted, such as closing the Salmon River to commercial fishing; placing a size limit on troll-caught salmon; and reverting the oyster beds of Yaquina Bay back to the people. Although the latter law will not have much effect on the oyster situation of Yaquina Bay for a few years, it openly condemns the present method of leasing the entire beds to one individual or company. Such a law will mean the saving of the oysters in Oregon.{\textquotedblright}},
	month = {1931, Apr.},
	pages = {p.30-31},
	keywords = {aquaculture, Columbia River, commercial fisheries, economics, environmental law and policy, Oregon, Pacific oyster = Crassostrea gigas, regulations, Rogue River, Salmon River, Willamette River, Yaquina Bay},
	author = {Anonymous}
}
@article {76456,
	title = {Protection for sealions},
	journal = {Pacific Fisherman },
	volume = {29},
	year = {1931},
	note = {Brief news item. {\textquotedblleft}Revocation by the Oregon legislature of the bounty on sealions and the enactment of a law actually making the killing of these animals illegal, and providing a penalty therefor, has aroused considerable comment.{\textquotedblright}  The bounty on killing seals, however, remained in place.},
	month = {1931, May},
	pages = {p.58},
	keywords = {California sea lion = Zalophus californianus, environmental legislation and policy, general, Harbor seal = Phoca vitulina, Oregon, Steller sea lion = Eumetopias jubata, Washington},
	author = {Anonymous}
}
