@article {83221,
	title = {Situation Analysis for Oregon{\textquoteright}s Emergent Seaweed Aquaculture Industry},
	year = {2023},
	note = {At present, seaweed aquaculture is an underdeveloped industry in Oregon. Pacific dulse is the only species cultivated today in the state. The industry has, however, great potential, and can provide significant ecological services by cleaning seawater and providing habitat for marine animals. There is potential for mitigating climate change by buffering acidic ocean water and sequestering carbon. It would be worthwhile to investigate possible products such as biofuels, fertilizer and animal feed. Possible negative impacts such as overharvesting of wild stock, lack of genetic diversity, and competition for nutrients should be explored, and a stronger regulatory environment is needed. This is a most interesting introduction to what could be a beneficial and profitable industry.},
	pages = {35 p.},
	institution = {The Nature Conservancy},
	address = {Portland, Or.},
	keywords = {algae, aquaculture, Bandon (Or.), Carbon sequestration, climate, environmental law and policy, Garibaldi (Or.), Newport (Or.), ocean acidification, Pacific dulse = Palmaria mollis, Port Orford (Or.), purple sea urchin = Strongylocentrotus purpuratus},
	url = {https://seagrant.oregonstate.edu/sites/seagrant.oregonstate.edu/files/orseaweedsituationanalysis_final.pdf},
	author = {Considine, Megan E. and Kirchner, Gway and Carter, Jena and Waters, Tiffany}
}
@article {83104,
	title = {Estimating the value of threatened species abundance dynamics},
	journal = {Journal of Environmental Economics and Management},
	volume = {113},
	number = {102639},
	year = {2022},
	note = {How much are people willing to pay for marginal increases in abundance of threatened species?  This paper looks at the value the public places on Coho salmon. {\textquotedblleft}Results provide direct evidence that conservation activities that achieve immediate abundance gains for a threatened species (or prevent immediate losses) produce significantly higher benefits than activities that gradually achieve the same abundance gains.{\textquotedblright} (from the Abstract)},
	pages = {15 p.},
	keywords = {abundance, Coho salmon = Oncorhynchus kisutch, depleted populations, ecological values, economics, general, Oregon Coast},
	doi = {https://doi.org/10.1016/j.jeem.2022.102639 },
	author = {Lewis, David J. and Kling, David M. and Dundas, Steven J. and Lew, Daniel K.}
}
@article {83189,
	title = {Nonfishing impacts on essential fish habitat},
	volume = {no.2022-01},
	year = {2022},
	note = {Many human activities that are not directly related to fishing can harm essential fish habitat. This publication looks at 19 different human activities that can damage essential fish habitat, from climate change to forest management to noise pollution, and more. The authors describe for each activity what is known to affect essential fish habitat, potential impacts, {\textquotedblleft}and provide proactive conservation measures designed to minimize or avoid them{\textquotedblright} (from the Plain Language Summary).},
	month = {2022, Dec.},
	pages = {258 p.},
	institution = {National Marine Fisheries Service},
	address = {Seattle, Wash.},
	keywords = {agriculture, Alsea River, aquaculture, climate, dams, dredging, energy, general, industrial development, Industrial waste, logging, mining, Noise, oil spills, Oregon Coast, ports, Sewage, shipping, Yaquina River},
	doi = {https://doi.org/10.25923/zxz1-m712},
	url = {https://repository.library.noaa.gov/view/noaa/48083/noaa_48083_DS1.pdf },
	author = {Kiffney, Peter and Thompson, Jamie and Blaud, Brianna and Hoberecht, Laura}
}
@article {83100,
	title = {Management of anadromous lampreys: Common threats, different approaches},
	journal = {Journal of Great Lakes Research. Supplement},
	volume = {47 },
	number = {Sup.1  },
	year = {2021},
	note = {This review article summarizes what is known about the statuses of many lamprey species around the world.  The usual suspects, primarily human activity and climate change get the blame for most population declines.  Management of the Pacific lamprey is a bright spot, largely due to the efforts and advocacy of Native Americans.  The Western river lamprey, on the other hand, suffers from inadequate research, which is needed in order to support conservation.},
	month = {2021, Dec.},
	pages = {S129-S146},
	keywords = {Alsea River, Beaver Creek, climate, Cummins Creek, dams, depleted populations, human impacts, land use, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), River lamprey = Lampetra ayresi, Salmon River,, Siletz River, Siuslaw River, Tenmile Creek, Umpqua River, water use, Yachats River, Yaquina River},
	doi = {https://doi.org/10.1016/j.jglr.2020.09.005 },
	author = {Clemens, Benjamin J. and Arakawa, Hiroaki and Baker, Cindy and Coghian, Stephen and Kucheryavyy, Aleksandr and Lampman, Ralph and Lan{\c c}a, Maria Jo{\~a}o and Mateus, Catarina Sofia and Miller, Allison and Nazari, Hassan and Peque{\~n}o, Germ{\'a}n and Sutton, Trent M. and Yanai, Seiji}
}
@booklet {83066,
	title = {Pacific Northwest Littoral Data},
	year = {2021},
	note = {{\textquotedblleft}This document contains five data tables in PDF file formats, that are used to characterize littoral subcell (beach, river mouth, and inner-shelf) conditions in the Pacific Northwest (PNW) region . . . These data have been compiled from pre-existing data sets . . . for the purposes of predicting possible beach erosion from potential future sea level rise (SLR) . . . The five data tables include Heavy-mineral tracers (Table 1), Heavy-mineral data (normalized) (Table 2), Subcell beach profile settings (Table 3), Subcell beach profile parameters (Table 4), and Subcell shelf profile parameters (Table 5){\textquotedblright} (p.1). The data supports the manuscript Peterson, C. D., Doyle, D. L., Rosenfeld, C. L., Kingen, K., (2020). Predicted Responses of Beaches, Bays, and Inner-Shelf Sand Supplies to Potential Sea Level Rise (0.5-1.0 m) in Three Small Littoral Subcells in the High-Wave-Energy Northern Oregon Coast, USA. Journal of Geography and Geology. v.12:.2. ( https://pdxscholar.library.pdx.edu/geology_fac/189/ )},
	chapter = {2021, Mar.},
	address = {Portland, Or.},
	keywords = {Agate Beach, Alsea River, bathymetry, beach profiles, climate, Columbia River, Coos River, Coquille River, erosion, Florence, Or., heavy minerals, Lincoln City, Or., Nehalem River, Nestucca River, Netarts, Or., Newport, Or., Nye Beach, Otter Rock, Reedsport, Or., Rogue River, Salmon River, Sand Lake, sea level, Seal Rock, Siletz River, Siuslaw River, Sixes River, South Beach, Or., The Capes, Umpqua Jetty, Umpqua River, Whale Cove, Wilson River},
	doi = {https://doi.org/10.15760/geology-data.01},
	url = {https://pdxscholar.library.pdx.edu/geology_data/1/ },
	author = {Peterson, Curt D. and Kingen, Kara E.P.},
	editor = {Portland State University. Geology Department}
}
@article {82651,
	title = {Arbuscular mycorrhizal fungi associations across multiple saltmarsh plant species mitigating the impacts of sea-level rise [poster]},
	volume = {no.21},
	year = {2019},
	note = {Fungi are omnipresent and frequently beneficial in ecosystems. Fungi are dependent on plants for their nourishment. An arbuscular mycorrhizal fungus is one that derives carbon nutrition from the roots of an associated plant. This association is beneficial to the plant because the plant can experience increased uptake of nutrients and an increased ability to withstand saltwater inundation. In an age of rising sea levels, the ability to withstand inundation is important. This poster describes research conducted by Portland State University faculty and students on two marshes in the Salmon River estuary, a low marsh and a high marsh.  Natural resource managers need to know which plants will be able to withstand saline stress and have better chances of success with marsh restoration projects and in mitigation of rising sea levels. The researchers want to know which plant species host arbuscular mycorrhizal fungi, and what the pattern of their distribution is across the low and high marshes.},
	month = {2019, Jul. 5},
	institution = {Portland State University},
	address = {Portland, Or.},
	keywords = {Salmon River Estuary, climate change, fungi, Marsh jaumea = Jaumea carnosa, Lyngbye{\textquoteright}s sedge = Carex lyngbyei, Pickleweed = Salicornia virginica, salinity, salt marsh, Saltgrass = Distichlis spicata, sea levels, wetland vegetation},
	url = {https://pdxscholar.library.pdx.edu/studentsymposium/2019/Posters/21 },
	author = {Koberstein, Rayna and de Rivera, Catherine E.}
}
@article {82641,
	title = {The art of education for salmonid ecology:  the Salmon River estuary as a learning laboratory for rural coastal students [abstract]},
	year = {2019},
	note = {This abstract describes a unique educational initiative for Lincoln City students in grades 7-12. The students experienced presentations on the history of the Salmon River estuary and its restoration, as well as learning the importance of estuaries in ecology. {\textquotedblleft}This presentation will explore the confluence of art, education and ecology with places of ecological and inspirational significance. Creating art that serves the holistic messaging needs of biological conservation education; reuniting Oregon{\textquoteright}s coastal estuaries play a critical role in the life histories of salmonids and other species. While agricultural conversion has reduced the productivity of many Oregon estuaries, the restoration of environments such as the Salmon River Estuary within the Cascade Head Biosphere Reserve, represent a vital opportunity to study and showcase the role these new anthropogenic changes have made for fish and future generations.{\textquotedblright} (from the Abstract)  The conference was held March 5-8, 2019 in Bend, Oregon.},
	pages = {p.73-74},
	institution = {American Fisheries Society Oregon Chapter},
	keywords = {Salmon River Estuary, art, education, dike removal, human impacts, marsh restoration, wetland restoration},
	url = {https://tinyurl.com/tx77a5k },
	author = {Klag, Graham}
}
@article {83136,
	title = {Classification of Native Vegetation of Oregon - 2019},
	year = {2019},
	note = {{\textquotedblleft}This classification is an update of the 2004 classification of native vegetation of Oregon by Kagan, Christy, Murray and Titus. As before, this classification lists the native plant associations known to occur in Oregon, and includes both successional and climax vegetation types that were part of the presettlement landscape of Oregon and can still be found in the state. It serves as an index to the diversity, distribution and relative rarity of the state{\textquoteright}s native plant associations, and as a guide to their literature.{\textquotedblright} (from the introduction)},
	pages = {109 p.},
	institution = {Oregon Biodiversity Information Center},
	address = {Portland, Or.},
	keywords = {bibliography, depleted populations, species list, terrestrial vegetation, wetland vegetation},
	url = {https://ir.library.oregonstate.edu/concern/technical_reports/2r36v492k },
	author = {Kagan, James S. and Brunner, Rachel L. and Christy, John A.}
}
@article {82621,
	title = {Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem},
	journal = {PLoS One},
	volume = {14},
	number = {7},
	year = {2019},
	note = {This article is a major scientific overview of the vulnerability of Pacific Coast anadromous salmonids to climate change. {\textquotedblleft}Nearly all listing units faced high exposures to projected increases in stream temperature, sea surface temperature, and ocean acidification. . . Anthropogenic factors, especially migration barriers, habitat degradation, and hatchery influence, have reduced the adaptive capacity of most steelhead and salmon populations. Enhancing adaptive capacity is essential to mitigate for the increasing threat of climate change. Collectively, these results provide a framework to support recovery planning that considers climate impacts on the majority of West Coast anadromous salmonids{\textquotedblright} (from the Abstract). Projections were made about Oregon coast coho salmon.},
	pages = {e0217711},
	edition = {2019, Jul. 24},
	keywords = {Oregon Coast, Pacific salmonids = Oncorhynchus spp., Coho salmon = Oncorhynchus kisutch, climate change, depleted populations, ecosystem health, endangered species, habitats, hatcheries, human impacts, life history, ocean acidification, water temperatur},
	doi = {https://doi.org/10.1371/journal.pone.0217711 },
	url = {https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0217711 },
	author = {Crozier, Lisa G. and McClure, Michelle M. and Beechie, Tim and Bograd, Steven J. and Boughton, David A. and Carr, Mark and Cooney, Thomas D. and Dunham, Jason B. and Greene, Correigh M. and Haltuch, Melissa A. and Hazen, Elliott L. and Holzer, Damon M. and Huff, David O. and Johnson, Rachel C. and Jordan, Chris E. and Kaplan, Isaac C. and Lindley, Steven T. and Mantua, Nathan J. and Moyle, Peter B. and Myers, James M. and Nelson, Mark W. and Spence, Brian C. and Weitkamp, Laurie A. and Williams, Thomas H. and Willis-Norton, Ellen}
}
@article {83011,
	title = {Expansion and systematics redefinition of the most threatened freshwater mussel family, the Margaritiferidae},
	journal = {Molecular Phylogenetics and Evolution},
	volume = {127},
	year = {2018},
	note = {In this article, the evolution, distribution and taxonomy of the freshwater pearl mussel family, Margaritiferidae, is explored. Fossils as well as genetic data were used to model the diversification of this family.  Maps, charts.},
	month = {2018, Oct.},
	pages = {p.98-118},
	keywords = {aquatic invertebrates, bivalves, evolution, general, genetics, geographic distribution, molluscs, morphology, mussels, phylogeny, taxonomy},
	doi = {https://doi.org/10.1016/j.ympev.2018.04.041 },
	author = {Lopes-Lima, Manuel and Bolotov, Ivan N. and Do, Van Tu and Aldridge, David C. and Fonseca, Miguel M. and Gan, Han Ming and Gofarov, Mikhail Y. and Kondakov, Alexander V. and Pri{\'e}, Vincent and Sousa, Ronaldo and Varandas, Simone and Vikhrev, Ilya V. and Teixeira, Amilcar and Wu, Rui-Wen and Wu, Xiaoping and Zieritz, Alexandra and Froufe, Elsa and Bogan, Arthur E.}
}
@article {82966,
	title = {Revising estimates of spatially variable subsidence during the A.D. 1700 Cascadia Earthquake using a Bayesian foraminiferal transfer function},
	journal = {Bulletin of the Seismological Society of America },
	volume = {108 },
	number = {2},
	year = {2018},
	note = {This article is about subsidence following the 1700 C.E. earthquake on the western coast of the United States.  {\textquotedblleft}We developed four transfer functions of increasing complexity to explore how and why the composition of the modern dataset and the choice of transfer-function type affects subsidence reconstructions. . . Our reconstructions support a heterogeneous rupture model for the A.D. 1700 earthquake, but indicate that slip estimates in patches from Alsea Bay to Netarts Bay (Oregon) and from Netarts Bay to Vancouver Island should be increased.{\textquotedblright} (from the Abstract)},
	pages = {p.654-673},
	keywords = {Alsea Bay, coastal hazards, earthquakes, foraminifera, mathematical modeling, paleosciences, Salmon River Estuary, sea level, Siletz Bay, Siuslaw Bay, subsidence, tsunamis},
	doi = {https://doi.org/10.1785/0120170269 },
	author = {Kemp, Andrew C. and Cahill, Niamh and Engelhart, Simon E. and Hawkes, Andrea D. and Wang, Kelin}
}
@article {76911,
	title = {A sea-level database for the Pacific coast of central North America},
	journal = {Quaternary Science Reviews},
	volume = {113},
	year = {2015},
	note = {When the glaciers melted at the end of the last ice age, sea levels along the Pacific Coast of North America did not rise uniformly.  Areas where the earth had been pressed down by the weight of glaciers saw relatively little sea level rise, as the land rebounded when the weight was removed.  Sites further away from the great glaciers saw higher sea levels.  In this paper, the authors describe a database of sea levels and reference points for the last 16,000 years in our area.  Appendices give reference points, descriptions, and referenced publications.  Interestingly, Alsea Bay in Appendix 1 is spelled {\textquotedblleft}Alsey Bay.{\textquotedblright}},
	month = {2015, Apr. 1},
	pages = {p.78-92},
	keywords = {Alsea Bay, Coos Bay, Coquille River, geology, Glaciation, Nehalem River, Nestucca Bay, Netarts Bay, paleosciences, Salmon River, sea level, Siletz Bay, Siuslaw River estuary, Yaquina Bay},
	doi = {10.1016/j.quascirev.2014.12.001},
	author = {Engelhart, Simon E. and Vacchi, Matteo and Horton, Benjamin P. and Nelson, Alan R. and Kopp, Robert E.}
}
@article {76891,
	title = {Stratigraphic and microfossil evidence for a 4500-year history of Cascadia subduction zone earthquakes and tsunamis at Yaquina River estuary, Oregon, USA},
	journal = {Geological Society of America Bulletin, },
	volume = {127},
	number = {1-2},
	year = {2015},
	note = {There{\textquoteright}s a freshwater spruce swamp buried near the northeastern shore of Sally{\textquoteright}s Bend in Yaquina Bay.  Sediment cores show 8-10 different soil sequences buried there, going back about 4500 years before the present.  Each sequence terminates abruptly with a sandy deposit and then over 10 centimeters of mud.  The authors of this paper infer that {\textquotedblleft}each buried soil represents a Cascadia subduction zone earthquake{\textellipsis}{\textquotedblright} (from the Abstract)  The article includes maps of the bay, and show locations of previous research by other scientists. The Yaquina Bay sequence is compared with sequences from other Oregon estuaries.},
	pages = {p.211-226},
	keywords = {Alsea Bay, Cannon Beach, coastal hazards, Coos Bay, Coquille River, earthquakes, geology, Netarts Bay, paleosciences, Sally{\textquoteright}s Bend, Salmon River, sediments, Sixes River, South Slough, tsunamis, Yaquina Bay, Yaquina River Estuary},
	doi = {10.1130/B31074.1},
	author = {Graehl, Nicholas A. and Kelsey, Harvey M. and Witter, Robert C. and Hemphill-Haley, Eileen and Engelhart, Simon E.}
}
@article {80231,
	title = {An Inventory and Classification of U.S. West Coast Estuaries},
	year = {2014},
	note = {{\textquotedblleft}To support restoration, enhancement and conservation of the ecosystem values of U.S. West Coast estuaries, we need first to inventory and classify those estuarine systems using a common scheme. Previous efforts have noted this need and responded with inventories, assessments and classifications of estuaries along the West Coast, but generally only for a subset, and often focused on larger estuaries.{\textquotedblright}  This document provides classification data for 691 estuaries in Washington, Oregon and California.},
	pages = {81 p.},
	institution = {The Nature Conservancy},
	address = {Arlington, Va. },
	keywords = {Alsea Bay, Chetco River estuary, Columbia River estuary, Coos Bay, Coquille River estuary, Devil{\textquoteright}s Lake, Depoe Bay, Little Creek, Beaver Creek, Rock Creek, Big Creek, Yachats River, Tenmile Creek, Siltcoos River, Tahkenitch Creek, Necanicum River estuar},
	url = {https://www.scienceforconservation.org/assets/downloads/West-Coast-Estuary-Inventory-2014.pdf},
	author = {Heady, Walter N. and O{\textquoteright}Connor, Kevin and Kassakian, Jennifer and Doiron, Kate and Endris, Charles and Hudgens, Daniel and Clark, Ross P. and Carter, Jena and Gleason, Mary G.}
}
@article {77361,
	title = {NorWeST Stream Temp: Regional Database and Modeled Stream Temperatures  [web page]},
	year = {2013},
	note = {This website gives water temperature data coupled with climate scenarios for western U.S. streams.  Hundreds of biologists and hydrologists contributed to the temperature database.  The database contains over 200,000,000 hourly stream temperature readings at more than 20,000 stream sites.  The data were used to develop 36 historical and future climate scenarios at 1-kilometer resolution for over 1,000,000 stream kilometers. The website includes an interactive stream temperature viewer.},
	publisher = {U.S. Rocky Mountain Research Station.  Air, Water \& Aquatic Environments Program},
	keywords = {Oregon, Pacific Northwest, Pacific Southwest, Intermountain West, water temperature, climate, environmental monitoring, mathematical modeling},
	url = {https://www.fs.usda.gov/rm/boise/AWAE/projects/NorWeST.html},
	author = {Isaak, D. J. and Wenger, S. J. and Peterson, E. E. and Ver Hoef, J. M. and Hostetler, S. and Luce, C. H. and Dunham, J. B. and Kershner, J. and Roper, B. B. and Nagel, D. and Horan, D. and Chandler, G. and Parkes, S. and Wollrab, S. and U.S. Rocky Mountain Research Station.  Air Water \& Aquatic Environments Program}
}
@article {82481,
	title = {A Conservation Assessment of West Coast (USA) Estuaries},
	year = {2011},
	note = {{\textquotedblleft}Funded by: The David and Lucile Packard Foundation{\textquotedblright}  {\textquotedblleft}This assessment outlines an enhanced planning approach for West Coast estuaries that incorporates an evaluation of the regional context for estuarine conservation and recommends an approach to site-scale planning with more focus on ecological processes and functions.{\textquotedblright} (p.1) {\textquotedblleft}A hierarchical classification system was developed for West Coast estuaries that identified three regions (based on climate, latitude, and oceanography) and four estuary types distinguished by the relative degree of influence of the hydrodynamic forcing mechanisms of waves, tides, and rivers.{\textquotedblright} (p.2)},
	pages = {65 p.},
	institution = {The Nature Conservancy},
	address = {Arlington, Va. },
	keywords = {Agriculture, Alsea Bay, estuarine dynamics, habitats, human impacts, hydrology, land ownership, land use, logging, mathematical modeling, Netarts Bay, Salmon River, Siletz Bay, Siuslaw River, Tillamook Bay, Umpqua River, Yaquina River},
	url = {https://ir.library.oregonstate.edu/concern/defaults/1r66j546d},
	author = {Gleason, Mary G. and Newkirk, Sarah and Merrifield, Matthew S. and Howard, Jeanette and Cox, Robin and Webb, Megan and Koepcke, Jennifer and Stranko, Brian and Taylor, Bethany and Beck, Michael W. and Fuller, Roger and Dye, Paul and Vander Schaaf, Dick and Carter, Jena}
}
@article {80221,
	title = {A Conservation Assessment of West Coast (USA) Estuaries},
	year = {2011},
	note = {{\textquotedblleft}Funded by: The David and Lucile Packard Foundation{\textquotedblright}  {\textquotedblleft}This assessment outlines an enhanced planning approach for West Coast estuaries that incorporates an evaluation of the regional context for estuarine conservation and recommends an approach to site-scale planning with more focus on ecological processes and functions.{\textquotedblright} (p.1) {\textquotedblleft}A hierarchical classification system was developed for West Coast estuaries that identified three regions (based on climate, latitude, and oceanography) and four estuary types distinguished by the relative degree of influence of the hydrodynamic forcing mechanisms of waves, tides, and rivers.{\textquotedblright} (p.2)},
	pages = {65 p.},
	institution = {The Nature Conservancy},
	address = {Arlington, Va. },
	keywords = {Agriculture, Alsea Bay, Chetco River, Columbia River estuary, Coos Bay, Coquille River estuary, estuarine dynamics, general ecosystem description, habitats, human impacts, hydrology, land ownership, land use, logging, Necanicum River estuary, Nehalem Ri},
	url = {http://hdl.handle.net/1957/28058},
	author = {Gleason, Mary G. and Newkirk, Sarah and Merrifield, Matthew S. and Howard, Jeanette and Cox, Robin and Webb, Megan and Koepcke, Jennifer and Stranko, Brian and Taylor, Bethany and Beck, Michael W. and Fuller, Roger and Dye, Paul and Vander Schaaf, Dick and Carter, Jena}
}
@article {11881,
	title = {Recovery of wild coho salmon in Salmon River Basin, 2008-2010},
	volume = {no.OPSW-ODFW-2011-10},
	year = {2011},
	note = {In 2007, after 30 years of artificially producing fish, the Salmon River Hatchery was closed.  This study reports on coho salmon in the Salmon River three years after the closure of the hatchery.  Favorable ocean conditions helped, but dangers such as high flow levels in winter remain.  "In the absence of intensive hatchery pressure, we hypothesize that the stream and estuary habitats in Salmon River will have sufficient connectivity, capacity, and quality to recover and sustain a resilient population of wild coho salmon." (p.33)},
	pages = {53 p.},
	institution = {Oregon Dept. of Fish and Wildlife},
	address = {Salem, Or.},
	keywords = {Coho salmon =  Oncorhynchus kisutch, depleted populations, genetics, hatcheries, hatchery salmonids, Salmon River, wild salmonids},
	url = {https://odfw-static.forestry.oregonstate.edu/freshwater/inventory/pdffiles/Salmon\%20River\%20ODFW-OPSW\%202011-10\%20final.pdf},
	author = {Jones, Kim K. and Cornwell, Trevan J. and Bottom, Daniel L. and Stein, Staci and Kelly, Holly Wellard and Campbell, Lance A.}
}
@inbook {51326,
	title = {Impacts of climate change on Oregon{\textquoteright}s coasts and estuaries},
	booktitle = {Oregon Climate Assessment Report},
	year = {2010},
	note = {This is Chapter 6 of the Oregon Climate Assessment Report. Predicts {\textquotedblleft}Increased winter{\textendash}early spring flow of coastal rivers and creeks and reduced flow during summer{\textquotedblright} for the Umpqua River (p.242)},
	pages = {p.211-268},
	publisher = {Oregon State University. College of Oceanic and Atmospheric Sciences. Oregon Climate Change Research Institute,},
	organization = {Oregon State University. College of Oceanic and Atmospheric Sciences. Oregon Climate Change Research Institute,},
	address = {Corvallis, Or.},
	keywords = {Alsea Bay, Alsea Spit, bacteria, Bayocean Spit, climate change, climate precipitation, coastal hazards, Columbia River estuary, Coos Bay, dissolved oxygen, El Nino, erosion, estuaries, geology, landslides, Nehalem Bay, Nehalem Spit, Neskowin (Or.), Netarts Bay, ocean acidification, Rockaway Beach, salinity, Salmon River Estuary, sea level, Siletz Bay, Tillamook Bay, water temperature, wave heights, Yachats River, Yaquina Bay},
	url = {https://digital.osl.state.or.us/islandora/object/osl\%3A637577},
	author = {Ruggiero, Peter and Brown, Cheryl A. and Komar, Paul D. and Allan, Jonathan C. and Reusser, Deborah A. and Lee II, Henry},
	editor = {Dello, Kathie and Mote, Philip W.}
}
@article {83220,
	title = {Contaminant exposure in outmigrant juvenile salmon from Pacific Northwest estuaries of the United States},
	journal = {Environmental Monitoring and Assessment},
	volume = {124},
	number = {1-3},
	year = {2007},
	note = {When juvenile salmonids migrate downstream towards the ocean, they can encounter and absorb harmful chemicals such as DDT, polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs) and pesticides. The authors of this paper measured harmful chemicals in tissues of juvenile salmonids, and in their prey.  They also measured stomach contents of salmon from estuaries and hatcheries. Results were not surprising:  industrial estuaries such as the Columbia River, Coos Bay and Yaquina Bay showed high contaminant exporsure (Yaquina Bay was high in PCBs in Chinook salmon), while natural estuaries like the Salmon and Elk River estuaries, had low exposures to harmful chemicals. Some of the conservation estuaries, including Alsea Bay, had relatively high exposures to contaminants. . Juvenile Chinook were more vulnerable than coho salmon.},
	pages = {p.167-194},
	keywords = {Alsea Bay, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Columbia River, Coos Bay, Coquille River estuary, DDT, Elk River, juvenile fish, migration, pesticides, Salmon River, Salmon River Hatchery, Tillamook Bay, water pollution, Yaquina Bay},
	doi = {https://doi.org/10.1007/s10661-006-9216-7 },
	author = {Johnson, Lyndal L. and Ylitalo, Gina M. and Arkoosh, Mary R. and Kagley, Anna N. and Stafford, Coral and Bolton, Jennie L. and Buzitis, Jon and Anulacion, Bernadita F. and Collier, Tracy K.}
}
@mastersthesis {12011,
	title = {Habitat use, movement, and life history variation of coastal cutthroat trout, <i>Oncorhynchus clarkii clarkii</i> , in the Salmon River estuary, Oregon},
	year = {2007},
	note = {Thesis (M.S.)/ Co-Major Professors: Hiram W. Li  and Ian Fleming},
	month = {2008},
	pages = {101 p.},
	school = {Oregon State University },
	type = {Masters Thesis},
	edition = {M.S.},
	chapter = {Dept. of Fisheries and Wildlife, Fisheries Science},
	address = {Corvallis, OR},
	keywords = {cutthroat trout = Oncorhynchus clarki, habitats, life history information, theses},
	url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/vd66w268p},
	author = {Krentz, Lisa K.}
}
@article {83007,
	title = {Pacific Northwest Coast Ecoregional Assessment},
	year = {2006},
	note = {{\textquotedblleft}Prepared by The Nature Conservancy, the Nature Conservancy of Canada, and the Washington Department of Fish and Wildlife.{\textquotedblright}  This is a very broad ecological assessment for the Pacific Northwest:  British Columbia, Washington and Oregon.  {\textquotedblleft}The purpose of the Pacific Northwest Coast ecoregional conservation assessment was to identify an efficient suite of conservation sites that will contribute toward the long-term survival of all viable native plant and animal species and natural communities in the ecoregion.{\textquotedblright} (p.ix) This document is accompanied by appendices indicating sites of interest. V.1 - main report, v.2 - appendices, v.3 - maps.
Appendices: https://ir.library.oregonstate.edu/concern/defaults/sb397d851
Maps: https://ir.library.oregonstate.edu/concern/defaults/v692tc30m},
	pages = {129 p.},
	institution = {The Nature Conservancy},
	address = {Portland, Or.},
	keywords = {climate, depleted populations, ecosystem health, ecosystem modeling, general, habitats, human impacts},
	url = {https://ir.library.oregonstate.edu/concern/defaults/8g84mr696},
	author = {VanderSchaaf, Dick and Wilhere, George and Ferdana, Zack and Popper, Ken and Schindel, Michael and Skidmore, Peter and Rolph, Dave and Lachetti, Pierre and Kittel, Gwen and Crawford, Rex and Pickering, Debbie and Christy, John A.}
}
@article {83134,
	title = {Classification of Native Vegetation of Oregon},
	year = {2004},
	note = {{\textquotedblleft}This classification lists the native plant associations known to occur in Oregon, and includes both successional and climax vegetation types that were an important part of the presettlement landscape of Oregon. It serves as an index to the diversity, distribution and relative rarity of the state{\textquoteright}s native plant associations, and as a guide to their literature. Plant associations are listed by scientific name, followed by common name and acronym. Listings include the global and state rank of each association, the ecoregion in which it occurs, its status as wetland or upland, and references describing the association.{\textquotedblright} (from the introduction)},
	pages = {52 p. },
	institution = {Oregon Natural Heritage Program},
	address = {Portland, Or.},
	keywords = {depleted populations, species list, terrestrial vegetation, wetland vegetation},
	url = {https://ir.library.oregonstate.edu/concern/defaults/kw52jd11x },
	author = {Kagan, James S. and Christy, John A. and Murray, Michael P. and Titus, Jonathan A.}
}
@article {12176,
	title = {Survey of pathogens in juvenile salmon <i>Oncorhynchus</i> spp. migrating through Pacific Northwest estuaries},
	journal = {Journal of aquatic animal health},
	volume = {16},
	number = {4},
	year = {2004},
	note = {Tracks selected pathogens in Chinook and coho salmon in Pacific Northwest estuaries from 1996-2001. Gives percentages of infected fish found in estuaries. Suggests role disease may play in salmonid ecology. Maps; charts.},
	month = {2004, Dec.},
	pages = {p.186-196},
	keywords = {Aeromonas salmonicida, Alsea Bay, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, Coos Bay, Coquille River, Elk River, erythrocytic necrosis virus or erythrocytic inclusion body syndrom (EIBS/ENV), Listonella anguillarum, Nonophyetus salmincola, Renibacterium salmoninarum, Salmon River, Yaquina River, Yersinia ruckeri},
	doi = {10.1577/H03-071.1},
	author = {Arkoosh, Mary R. and Clemons, E. and Kagley, A. N. and Stafford, C. and Glass, A. C. and Jacobson, K. and Reno, P. and Myers, M. S. and Casillas, E. and Loge, F. and Johnson, L. L. and Collier, T. K.}
}
@book {25996,
	title = {Oregon lampreys:  natural history, status and analysis of management issues},
	series = {Information Reports (Oregon. Fish Division)},
	number = {2002-01},
	year = {2002},
	note = {Lampreys have been declining in Oregon.  This report looks at what is known about the species and possible causes for the decline. Colored maps, charts and photographs. "This paper concludes with a Problem Analysis for Oregon lampreys. Our biggest problem is poor information, ranging from not knowing basic species identity to having inefficient or no systematic monitoring of lamprey abundance and distribution." (Executive Summary, p.2)},
	month = {2002},
	pages = {80 p.},
	publisher = {Oregon Dept. of Fish and Wildlife},
	organization = {Oregon Dept. of Fish and Wildlife},
	address = {[Portland, Or.]},
	keywords = {Alsea River, Beaver Creek, Coos River, Coquille River, depleted populations, Drift Creek, Gold Ray Dam, Kilchis River, life history information, Necanicum River, Nehalem River, North Umpqua River, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), population biology, population count, reproductive behavior, Rogue River, Salmon River, Siletz River, Siuslaw River, Smith River, South Umpqua River, taxonomy, Tenmile Creek, Western brook lamprey = Lampetra richardsoni, Wilson River, Winchester Dam, Yachats River, Yaquina River},
	url = {https://digital.osl.state.or.us/islandora/object/osl:18613},
	author = {Kostow, Kathryn Eileen}
}
@article {12341,
	title = {Effect of pollution on fish diseases:  potential impacts on salmonid populations},
	journal = {Journal of Aquatic Animal Health},
	volume = {10},
	year = {1998},
	note = {Discusses distribution of three naturally-occurring pathogens in wild salmonids in five Oregon rivers. Many fish carry pathogens and are able to resist them, however, pollution lowers resistance to disease by weakening the immune systems.},
	pages = {182-190},
	keywords = {Alsea Bay, Chinook salmon = Oncorhynchus tshawytscha, Coos Bay, Coquille River, Elk River, erythrocytic inclusion body syndrome, erythrocytic necrosis virus, Nanophyetus salmincola, Renibacterium salmoninarum, Salmon River},
	author = {Arkoosh, Mary R. and Casillas, Edmundo and Clemons, Ethan and Kagley, Anna N. and Olson, Robert and Reno, Paul and Stein, John E.}
}
@article {12361,
	title = {Status review of chinook salmon from Washington, Idaho, Oregon, and California},
	volume = {no.35},
	year = {1998},
	note = {The team studying Chinook salmon felt that for the Oregon Coast this species is not in danger of extinction, nor thought to become extinct "in the forseeable future" (p.249).  Appendix D gives the known history of hatchery releases.  },
	pages = {443 p.},
	institution = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service},
	address = {[Seattle, Wash.] },
	keywords = {Alsea River, Chinook salmon = Oncorhynchus tshawytscha, Coquille River, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, historical, Kilchis River, life history information, Miami River, Millicoma Rive, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, r Coos River, Salmon River, salmonid species, Siletz River, Siuslaw River, statistics, Tillamook River, Trask River, Umpqua River, Wilson River, Yachats River, Yaquina River},
	url = {https://repository.library.noaa.gov/view/noaa/3034},
	author = {Myers, James M. and Kope, Robert G. and Bryant, Gregory J. and Teel, David; and Lierheimer, Lisa J. and Wainwright, Thomas C. and Grant, W. Stewart and Waknitz, F. William and Neely, Kathleen and Lindley, Steven T. and Waples, Robin S.}
}
@inbook {82561,
	title = {Great-earthquake potential in Oregon and Washington {\textendash} an overview of recent coastal geologic studies and their bearing on segmentation of Holocene ruptures, Central Cascadia Subduction Zone},
	booktitle = {Assessing Earthquake Hazards and Reducing Risk in the Pacific Northwest, v.1},
	series = {U.S. Geological Survey Professional Paper},
	volume = {no.1560 v.1},
	year = {1996},
	note = {This article gives a good overview of the discovery of the Pacific Northwest{\textquoteright}s past earthquake history and what was known about this history. Unfortunately, at the time this article was written, while studies were being done on 27 estuaries in the region, only half of the work had been completed. There is good information about Netarts, Salmon River, Siletz and Alsea Bays.},
	pages = {p.91-114},
	publisher = {U.S. G.P.O.},
	organization = {U.S. G.P.O.},
	address = {Washington, D.C.},
	keywords = {Nehalem River, Nestucca River, Netarts Bay, Salmon River estuary, Siletz Bay, Alsea Bay, Siuslaw River, Umpqua River estuary, Coos Bay, South Slough, Coquille River estuary, coastal hazards, earthquakes, tsunamis, geology, paleosciences, tectonics},
	url = {https://pubs.usgs.gov/pp/1560vol1/report.pdf},
	author = {Nelson, Alan R. and Personius, Stephen F.},
	editor = {Rogers, A.M. and Walsh, Timothy J. and Kockelman, William J. and Priest, George R.}
}
@article {12446,
	title = {Status review of coho salmon from Washington, Oregon, and California},
	volume = {no.24},
	year = {1995},
	note = {The Biological Review Team concluded that "coho salmon in this ESU are not at immediate risk of extinction but are likely to become endangered in the future if present trends continue." The Team noted that "spawning escapements have declined substantially during this century and may now be at less than 5\% of their abundance in the early 1900s." (p.128)  },
	pages = {258 p.},
	institution = {U.S. Dept. of Commerce, National Oceanic and Atmoospheric Administration, National Marine Fisheries Service, Northwest Fisheries Science Center },
	address = {Seattle, Wash.},
	keywords = {Coho salmon = Oncorhynchus kisutch, Coos River, Coquille River, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, historical, life history information, Miami River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Salmon River, salmonid species, Siletz River, Siuslaw River, statistics, Tillamook River, Umpqua River, Wilson River, Yaquina River},
	url = {https://www.nwfsc.noaa.gov/assets/25/5585_06172004_123333_coho.pdf},
	author = {Weitcamp, Laurie A. and Wainwright, Thomas C. and Bryant, Gregory J. and Milner, George B. and Teel, David J. and Kope, Robert G. and Waples, Robin S.}
}
@article {12471,
	title = {Sediments, beach morphology and sea cliff erosion within an Oregon Coast littoral cell},
	journal = {Journal of Coastal Research},
	volume = {10},
	number = {1},
	year = {1994},
	note = {Discusses the Lincoln City Littoral Cell, which extends 24 miles from Government Point to Cascade Head. Mostly about beach processes, but does discuss erosion and its effects on Siletz and Salmon River sandspits.},
	month = {1994, Winter},
	pages = {p.144-157},
	keywords = {coastal hazards, erosion, Salmon River, Salmon River Spit, sediments, Siletz River, Siletz Spit},
	author = {Shih, Shyuer-Ming and Komar, Paul D.}
}
@article {12521,
	title = {Status of anadromous salmonids in Oregon coastal basins},
	year = {1992},
	note = {At the time of this publication, the Salmon River{\textquoteright}s population of wild coho salmon was considered "Depressed." The wild fall Chinook population was rated "Special Concern" because of hatchery strays. Chum salmon in the Salmon River were also of "Special Concern."  The status of the wild steelhead population on the Salmon River was felt to be "Depressed."},
	pages = {83 p.},
	institution = {Oregon Dept. of Fish and Wildlife},
	keywords = {Alsea River, Beaver Creek, Chinook salmon = Oncorhynchus tshawytscha, chum salmon  = Oncorhynchus keta, Coho salmon = Oncorhynchus kisutch, Coos River, Coquille River, cutthroat trout = Oncorhynchus clarki, depleted populations, hatchery salmonids, Kilchis River, Miami River, Necanicum River, Nehalem River, Nestucca River, r Chetco River, r Siuslaw River, Rogue Rive, Salmon River, Siletz River, Siltcoos River, Sixes River, Smith River, statistics, steelhead trout = Oncorhynchus mykiss, Tahkenitch Creek, Tenmile Creek, Tillamook Bay, Tillamook River, Trask River, Umpqua River, wild salmonids, Wilson River, Yachats Rive, Yaquina River},
	author = {Nickelson, Thomas E. and Nicholas, Jay W. and McGie, Alan M. and Lindsay, Robert B. and Bottom, Daniel L. and Kaiser, Rodney J. and Jacobs, Steven E.}
}
@article {55401,
	title = {Estimated run size of winter steelhead in Oregon coastal streams, 1980-85},
	volume = {no.89-1},
	year = {1989},
	month = {1989},
	pages = {18 p.},
	institution = {Oregon Dept. of Fish and Wildlife, Research and Development Section},
	address = {Portland, Or.},
	keywords = {abundance, Alsea River, Beaver Creek (Lincoln County), Cow Creek, Deadwood Creek (Siuslaw), Drift Creek (Alsea), Drift Creek (Siletz), Fall Creek (Alsea), Five Rivers (Alsea), Indian Creek (Siuslaw), Lake Creek (Siuslaw), Munsel Lake (Siuslaw), North Fork Alsea River, North Fork Siletz River, North Fork Siuslaw River, North Umpqua River, population count, Rock Creek (Siletz), Salmon River, Schooner Creek (Siletz), Siletz River, Siuslaw River, Slick Rock Creek (Salmon), Smith River, South Fork Alsea River, South Fork Siletz River, South Umpqua River, steelhead trout = Oncorhynchus mykiss, Sweet Creek (Siuslaw), Yachats River, Yaquina Bay, Yaquina River},
	url = {https://digital.osl.state.or.us/islandora/object/osl\%3A18408},
	author = {Kenaston, Ken R.}
}
@article {12711,
	title = {Sediment composition and hydrography in six high-gradient estuaries of the Northwestern United States},
	journal = {Journal of sedimentary petrology},
	volume = {54},
	number = {1},
	year = {1984},
	note = {Quantified beach- and river-derived sands and relative abundance of fine and coarse sand in six estuaries on the U.S. West Coast. Found correlation between the ratio of mean tidal prism volume to mean fluvial discharge rate x 6 hours and sediment composition in six Pacific Northwest estuaries. Discusses unusual sedimentation in some estuaries and speculates as to causes. },
	pages = {p.86-97},
	keywords = {Alsea Bay, hydrography, Salmon River Estuary, sediments, Siletz Bay, Siuslaw Bay, Tillamook Bay},
	author = {Peterson, Curt and Scheidegger, Kenneth and Komar, Paul and Niem, Wendy}
}
@article {30751,
	title = {A resource survey of river energy and low-head hydroelectric power potential in Oregon.  Appendix 18: mid-coast basin},
	volume = {no.61, appendix 18},
	year = {1979},
	note = {Gives hydro-power potential for reaches in the Salmon River and tributaries, Schooner Creek, Crift Creek, the Siletz River and tributaries, the Yaquina River and tributaries, Beaver Creek, the Alsea River and tributaries, the Yachats River, Tenmile Creek, Big Creek, the Siuslaw River and tributaries, the Siltcoos River and tributaries, and Tahkenitch Creek.},
	month = {April_1979},
	pages = {71 p.},
	institution = {Water Resources Research Institute},
	address = {Corvallis, Or.},
	keywords = {Alsea Bay, Alsea River, Beaver Creek, Big Creek, Drift Creek (Siletz), hydrology, industrial development, physical, Salmon River, Schooner Creek, Siletz River, Siltcoos River, Siuslaw River, Tahkenitch Creek, Tenmile Creek, Yachats River, Yaquina River},
	url = {https://ir.library.oregonstate.edu/concern/defaults/m900nz718},
	author = {Klingeman, Peter C.}
}
@book {12966,
	title = {An Economic Evaluation of Salmonid Fisheries Attributable to Siuslaw National Forest},
	year = {1976},
	month = {1976},
	pages = {12 p.},
	publisher = {United States Forest Service, Pacific Northwest Region},
	organization = {United States Forest Service, Pacific Northwest Region},
	address = {Corvallis, Or.},
	keywords = {hatchery salmonids, Siuslaw National Forest, wild salmonids},
	author = {Kunkel, Clair and Janik, Phil and U.S. Forest Service. Pacific Northwest Region, and Oregon. Siuslaw National Forest,}
}
@article {13231,
	title = {A preliminary investigation of the heavy mineral suites of the coastal rivers and beaches of Oregon and northern California},
	journal = {The Ore Bin},
	volume = {30},
	number = {9},
	year = {1968},
	month = {1968},
	pages = {165-180},
	keywords = {Alsea River, Chetco River, Coos River, Coquille River, geological, heavy minerals, hydrology, Kilchis River, Little Nestucca River, Miami River, Millicoma River, Necanicum River, Nehalem River, Nestucca River, North Fork Nehalem River, paleosciences, physical, Rogue River, Salmon River, sediment data, Siletz River, Siuslaw River, Sixes River, Tillamook River, Trask River, Umpqua River, Wilson River, Yaquina River, Yaquina River Basin},
	isbn = {0148-1827},
	url = {https://ir.library.oregonstate.edu/concern/administrative_report_or_publications/p26770670},
	author = {Kulm, Laverne D. and Scheidegger, K. F. and Byrne, John V. and Spigai, J. J.}
}
