@article {83193, title = {Freshwater mussel populations in Pacific Coast watersheds (Oregon, USA): occurrence, condition, habitat, and fish species overlap}, journal = {Hydrobiologia}, volume = {850}, year = {2023}, note = {Freshwater mussels provide several valuable ecosystem services, including biofiltration, which removes nutrients, sediments, algae, harmful bacteria and heavy metals from the environment. Despite their value, freshwater mussel life cycles are not well understood, and their populations are declining throughout the west. This article concerns the dominant freshwater mussel in Oregon, the western pearl mussel, Margaritifera falcata. {\textquotedblleft}To understand M. falcata population ecology in Oregon{\textquoteright}s coastal watersheds, we analyzed stream survey data on presence/absence of mussels collected over a recent eleven-year period, explored co-varying habitat characteristics, and summarized mussel distribution and host fish co-occurrence. We also collected M. falcata and compared condition indices among eight locations{\textquotedblright} (from the Abstract). This is an open-access article. Additional data is included in a supplementary file.}, month = {2023}, pages = {p.821{\textendash}839}, keywords = {Alsea River, Beaver Creek, Coho salmon = Oncorhynchus kisutch, depleted populations, Devil{\textquoteright}s Lake, geographical distribution, life history information, Salmon River, Siletz River, Siuslaw River, Umpqua River, Western pearl mussel = Margaritifera falcata, Yachats River, Yaquina River}, doi = {https://doi.org/10.1007/s10750-022-05127-w}, url = {https://link.springer.com/article/10.1007/s10750-022-05127-w}, author = {Scully-Engelmeyer, Kaegan and Blevins, Emilie and Granek, Elise F. and Constable, Ronald J., Jr.} } @article {83219, title = {Salmonid egg-to-fry survival and capture methods: Bibliography}, volume = {no.2023-02}, year = {2022}, note = {"Fish biologists at NMFS{\textquoteright} California Central Valley Division are interested in the variety of methods used to examine the survival of fish eggs in a rivers where salmonids dig nests in gravel. They are also interested in how salmonid egg-to-fry survival is calculated. To that end, the NOAA Central Library conducted a literature search and present their findings in this bibliography." (Background \& Scope)}, month = {2022, Dec.}, pages = {126 p.}, keywords = {bibliography, Chinook salmon = Oncorhynchus tshawytscha, chum salmon = Oncorhynchus keta, Coho salmon = Oncorhynchus kisutch, cutthroat trout = Oncorhynchus clarki, developmental stages, juvenile fish, life history information, Pink salmon (humpback) = Oncorhynchus gorbuscha, steelhead trout = Oncorhynchus mykiss}, doi = {https://doi.org/10.25923/wp1n-xt62 }, url = {https://repository.library.noaa.gov/view/noaa/48004/}, author = {Shinn, Hope} } @article {76321, title = {The contribution of estuary-resident life histories to the return of adult Oncorhynchus kisutch}, journal = {Journal of Fish Biology }, volume = {85}, year = {2014}, note = {The conventional model of coho salmon life history assumes that that young coho salmon rear in the streams where they were born, and return to their natal streams as adults in their third year. More recent research has shown that there is a wider variety of life history patterns, and that estuaries may be more important for some coho salmon than was previously known. {\textquotedblleft}This research reconstructs freshwater and estuarine rearing and migration pathways of juvenile O. kisutch in the Salmon River basin on the central Oregon coast. It then quantifies the contribution of each juvenile life-history type to adult returns.{\textquotedblright} (p.53)}, pages = {p.52-80}, keywords = {Coho salmon = Oncorhynchus kisutch, habitats, juvenile fish, life history information, marsh restoration, salinity, Salmon River Estuary, wetland restoration, wetland vegetation}, doi = {10.1111/jfb.12380}, author = {Jones, Kim K. and Cornwell, Trevan J. and Bottom, Daniel L. and Campbell, Lance A. and Stein, Staci} } @article {76436, title = {Nursery Functions of U.S. West Coast Estuaries: The State of Knowledge for Juveniles of Focal Invertebrate and Fish Species}, year = {2014}, note = {This report summarizes what is known about the role of estuaries as nurseries for important aquatic species. The authors inventoried 303 West Coast estuaries and categorized each by class (lagoonal, riverine, embayment and sound) and subclass (estuarine coastal subtidal, tidal channel/creek, slough and lagoon). They examined 15 different species that used estuaries and noted what is known and not known about their life cycles and use of estuaries. {\textquotedblleft}Together with the estuary inventory and the geodatabase, this report represents the first stage in a larger effort to better understand the nursery functions of West Coast estuaries for fish and invertebrates.{\textquotedblright} (p.3)}, pages = {168 p.}, institution = {The Nature Conservancy}, address = {Arlington, Va.}, keywords = {aquatic invertebrates, Bat stingray = Myliobatus californicus (Aetobatus californicus), Bay shrimp = Crangon franciscorum, Brown rockfish = Sebastes auriculatus, California halibut = Paralichthys californicus, Chinook salmon = Oncorhynchus tshawytscha, Coho salmon = Oncorhynchus kisutch, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), eelgrass = Zostera marina, English sole = Parophrys vetulus, estuaries, fishes, general, geographic distribution, Green sturgeon = Acipenser medirostris, habitats, juvenile fish, Leopard shark = Triakis semifasciata, life history information, Oregon, Pacific Coast, Pacific herring = Clupea pallasi, Pacific staghorn sculpin = Leptocottus armatus, Shiner perch = Cymatogaster aggregate, Starry flounder = Platichthys stellatus, steelhead trout = Oncorhynchus mykiss}, url = {https://www.scienceforconservation.org/products/nursery-functions-of-estuaries}, author = {Hughes, Brent B. and Levey, Matthew D. and Brown, Jennifer A. and Fountain, Monique C. and Carlisle, Aaron B. and Litvin, Steven Y. and Greene, Correigh M. and Heady, Walter N. and Gleason, Mary G.} } @article {76906, title = {Variation in juvenile Chinook salmon diet composition and foraging success between two estuaries with contrasting land-use histories [PowerPoint presentation]}, journal = {Salish Sea Ecosystem Conference. }, number = {Paper 70}, year = {2014}, note = {This is a .pdf of a PowerPoint presentation at a conference. Estuaries may offer attractive opportunities for foraging for juvenile Chinook salmon. Human intervention can cause wetland losses, however, which may disrupt or reduce invertebrate assemblages, leading to less successful foraging, less growth and lower survival rates for young fish. Since most of the wetlands in the Salmon River have been restored, it serves as a reference point when this issue is studied. The authors found that {\textquotedblleft}wetland loss appeared to mediate the effect of density on salmon foraging performance.{\textquotedblright} (slide 20)}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, Duwamish River, feeding behavior, food availability, habitats, human impacts, juvenile fish, life history information, Nisqually River, physical modifications, Salmon River Estuary, wetlands}, url = {https://cedar.wwu.edu/cgi/viewcontent.cgi?referer=\&httpsredir=1\&article=1531\&context=ssec}, author = {David, Aaron and Simenstad, Charles and Cordell, Jeffrey and Toft, Jason and Ellings, Christopher} } @article {34636, title = {Relating spatial and temporal scales of climate and ocean variability to survival of Pacific Northwest Chinook salmon (Oncorhynchus tshawytscha)}, journal = {Fisheries oceanography}, volume = {22}, number = {1}, year = {2013}, note = {Studied Chinook salmon populations from Alaska to California and attempted to model their rates of survival and the relevant geographic scales involved. The Salmon River Chinook salmon population was used as a representative group for the Oregon Coast.}, month = {2013, Jan.}, pages = {p.14-31}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, climate, climate change, depleted populations, El Nino, food availability, life history information, population biology, Salmon River, water temperature}, doi = {DOI: 10.1111/fog.12001}, author = {Sharma, Rishi and V{\'e}lez-Espino, Luis A. and Wertheimer, Alex C. and Mantua, Nathan and Francis, Robert C.} } @article {51391, title = {Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific}, volume = {EPA/600/R/12/631}, year = {2012}, note = {{\textquotedblleft}The Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific {\textellipsis} provides maps of native and invaded ecoregions for all the reported marine/estuarine nonindigenous species (NIS) in the North Pacific, exclusive of marsh plants. Additionally, environmental and habitat information for each species is summarized in two-page species profiles, along with an analyses of the extent of invasion at the ecoregion and regional scales across the six North Pacific Marine Science Organization (PICES) member countries (United States, Canada, Russia, Japan, Korea, and China). The information in the NIS Atlas is from the PICES Nonindigenous Species Information System.{\textquotedblright} (from publisher{\textquoteright}s website) {\textquotedblleft}With Contributions by Katie Marko, Emily Saarinen, Tad Larsen, Caroline Emch-Wei, Meredith Payne, and PICES WG21 members{\textquotedblright} (from title page)}, pages = {1,943 p.}, institution = {National Health and Environmental Effects Research Laboratory. Office of Research and Development,}, keywords = {algae, annelids, arthropods, bryozoans, ciliates, cnidarian, crustaceans, ctenophores, diatoms, dinoflagellates, echinoderms, fishes, flatworms, foraminifera, fungi, habitats, introduced species, life history information, molluscs, nematodes, Oregon, Pacific Northwest, polychaete worms, sponges, terrestrial vegetation, tunicates}, url = {https://tinyurl.com/ywb357p2}, author = {Lee II, Henry and Reusser, Deborah A.} } @article {11861, title = {Life history variability, habitat use, and migratory behavior of coastal cutthroat trout in the Salmon River, Oregon}, volume = {no.OPSW-ODFW-2012-10}, year = {2012}, note = {Reports on results of tagging cutthroat trout in the Salmon River in 2004, 2009 and 2010. Used trapping, electrofishing, beach seining and acoustic telemetry to study the population and its life history. This study "complements" Lisa K. Krentz{\textquoteright}s 2007 study of coastal cutthroat trout life history patterns, "while providing a novel perspective on selected aspects of cutthroat life history, growth, and survival." (p.22) There were high annual variations in migratory and residence patterns. "Although we have found it difficult to ascribe individual fish to estuary or ocean rearing strategies, it appears that cutthroat use one or moer rearing strategies before returning to freshwater in the fall." (p.25) }, pages = {29 p.}, institution = {Oregon Dept. of Fish and Wildlife}, address = {Salem, Or.}, keywords = {abundance, Bear Creek, Coastal cutthroat trout = Oncorhynchus clarki clarki, geographic distribution, juvenile fish, life history information, population biology, population count, Salmon River, Slick Rock Creek, temporal distribution, Trout Creek}, url = {https://tinyurl.com/mrxs5xnm}, author = {Stein, Staci and Cornwell, Trevan J. and Jones, Kim K.} } @article {11906, title = {Life History Variability, Habitat Use, and Migratory Behavior of Coastal Cutthroat Trout in the Salmon River, Oregon}, year = {2010}, note = {Reports on results of tagging cutthroat trout in the Salmon River in 2004 and 2009. This study calls into question Lisa K. Krentz{\textquoteright}s 2007 study of coastal cutthroat trout life history patterns. "In contrast to life history patterns in other Oregon estuaries", Krentz had found that cutthroat trout of varying sizes spent long periods of time in channels in the Salmon River. This study did not find that cutthroat trout had extended stays in the estuary: either the fish stayed in freshwater, or, if they migrated into the estuary, they soon moved out to the ocean. Future research and analysis will be directed towards resolving differences between the two studies. Charts, maps, infrared aerial photograph.}, pages = {21 pp}, institution = {Oregon Dept. of Fish and Wildlife}, address = {Salem, Or.}, keywords = {Coastal cutthroat trout = Oncorhynchus clarki clarki, geographic distribution, juvenile fish, life history information, Salmon River, temporal distribution}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A989898}, author = {Cornwell, Trevan J. and Jones, Kim K. and Stein, Staci} } @article {11916, title = {Reconstructing juvenile Chinook salmon life history in the Salmon River Estuary, Oregon, using otolith microchemistry and microstructure}, journal = {Transactions of the American Fisheries Society}, volume = {139}, year = {2010}, note = {Use of the Salmon River Estuary{\textquoteright}s marsh channels by sub-yearling Chinook salmon was studied. Study suggests that "individual salmon may exhibit fidelity at the scale of secondary marsh channels within an intertidal marsh-channel network." Found "considerable variation" in wetland use, and relates that variation to foraging opportunities and risks of predation. Suggests that nekton may be more abundant or active at night, providing more food. Suggests tide gates "negatively affect access to habitat by juvenile salmon." Supports preserving the connections between marsh channels. Publisher{\textquoteright}s .pdf courtesy of the American Fisheries Society.}, pages = {p.535-549}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, life history information, Salmon River, temporal distribution}, doi = {10.1577/T08-163.1}, url = {https://ir.library.oregonstate.edu/concern/articles/1n79h4894}, author = {Volk, Eric C. and Bottom, Daniel L. and Jones, Kim K. and Simenstad, Charles A.} } @book {83008, title = {Freshwater Mussels of the Pacific Northwest}, year = {2009}, note = {2nd edition. Freshwater mussels are among the most endangered animals on earth. Over 70\% of all freshwater mussel species in North America are considered threatened or endangered, and 35 species are believed to be extinct. Freshwater mussels serve as important bioindicators, being sensitive to stream temperatures, dissolved oxygen, sedimentation and pollution. This valuable guide will aid in awareness of the value of these species, as well as in identification.}, pages = {51 p.}, publisher = {Xerxes Society for Invertebrate Conservation}, organization = {Xerxes Society for Invertebrate Conservation}, edition = {2nd}, chapter = {51 p.}, address = {Portland, Or. }, keywords = {anatomy, aquatic invertebrates, bivalves, general, life history information, mollusks, mussels, taxonomy, water quality}, url = {https://xerces.org/sites/default/files/2018-05/09-002_02_XercesSoc_Freshwater-Mussels-of-the-PNW_web.pdf}, author = {Nedeau, Ethan Jay and Smith, Allan K. and Stone, Jen and Jepsen, Sarina} } @mastersthesis {11936, title = {Growth, Residence, and Movement of Juvenile Chinook Salmon within Restored and Reference Estuarine Marsh Channels in Salmon River, Oregon}, year = {2009}, note = {One life history strategy for Chinook salmon is the "sea-type" or "ocean-type" strategy. The young salmon adopting this strategy move from freshwater into the estuary and forage for food in estuarine channels. This pattern makes these salmon vulnerable to habitat degradation in estuaries. "Understanding how juvenile salmon use estuarine habitat and the costs and benefits derived from estuarine rearing is essential to effective conservation and restoration of coastal Chinook salmon populations throughout the Pacific Northwest and is the topic of this thesis." Co-major professors were Ian K. Fleming and Dan Bottom. }, pages = {150 p.}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife, Fisheries}, address = {Corvallis, Or.}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, feeding behavior, geographic distribution, habitats, juvenile fish, life history information, marshes, Salmon River Estuary, temporal distribution, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/dv13zz42s}, author = {Hering, David K.} } @mastersthesis {12011, title = {Habitat use, movement, and life history variation of coastal cutthroat trout, Oncorhynchus clarkii clarkii , in the Salmon River estuary, Oregon}, year = {2007}, note = {Thesis (M.S.)/ Co-Major Professors: Hiram W. Li and Ian Fleming}, month = {2008}, pages = {101 p.}, school = {Oregon State University }, type = {Masters Thesis}, edition = {M.S.}, chapter = {Dept. of Fisheries and Wildlife, Fisheries Science}, address = {Corvallis, OR}, keywords = {cutthroat trout = Oncorhynchus clarki, habitats, life history information, theses}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/vd66w268p}, author = {Krentz, Lisa K.} } @proceedings {12096, title = {Feeding ecology of cutthroat trout in the Salmon River Estuary, Oregon}, year = {2005}, note = {Another paper on life history strategies of coastal cutthroat trout, finding they were resident in the Salmon River Estuary for long periods of time, and noting their diet. Lisa McLaughlin, formerly known as Lisa Krentz, who initially asserted the previously unknown estuarine stay for cutthroat trout, co-authored this study. }, pages = {p.144-151}, publisher = {Oregon Chapter of the American Fisheries Society}, address = {Port Townsend, Wash.}, keywords = {aquatic invertebrates, Coastal cutthroat trout = Oncorhynchus clarki clarki, feeding behavior, fishes, habitats, juvenile fish, life history information, marshes, Salmon River Estuary}, author = {Jones, David S. and Fleming, Ian A. and McLaughlin, Lisa K.}, editor = {Connolly, Patrick J. and Williams, T. H. (Thomas Herbert) and Gresswell, Robert E and American Fisheries Society. Oregon Chapter.} } @book {25996, title = {Oregon lampreys: natural history, status and analysis of management issues}, series = {Information Reports (Oregon. Fish Division)}, number = {2002-01}, year = {2002}, note = {Lampreys have been declining in Oregon. This report looks at what is known about the species and possible causes for the decline. Colored maps, charts and photographs. "This paper concludes with a Problem Analysis for Oregon lampreys. Our biggest problem is poor information, ranging from not knowing basic species identity to having inefficient or no systematic monitoring of lamprey abundance and distribution." (Executive Summary, p.2)}, month = {2002}, pages = {80 p.}, publisher = {Oregon Dept. of Fish and Wildlife}, organization = {Oregon Dept. of Fish and Wildlife}, address = {[Portland, Or.]}, keywords = {Alsea River, Beaver Creek, Coos River, Coquille River, depleted populations, Drift Creek, Gold Ray Dam, Kilchis River, life history information, Necanicum River, Nehalem River, North Umpqua River, Pacific lamprey = Entosphenus tridentatus (Lampetra tridentata), population biology, population count, reproductive behavior, Rogue River, Salmon River, Siletz River, Siuslaw River, Smith River, South Umpqua River, taxonomy, Tenmile Creek, Western brook lamprey = Lampetra richardsoni, Wilson River, Winchester Dam, Yachats River, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl:18613}, author = {Kostow, Kathryn Eileen} } @article {12276, title = {Draft Oregon coastal juvenile rockfish study}, year = {2000}, note = {This paper describes a pilot project to develop a recruitment index for rockfish. Rockfish bear live young in the winter. "The larvae live in the plankton for three to five months before settling to the benthos, usually near some sort of structure." Juvenile rockfish live in estuaries before migrating to the ocean. For this study, beach seines were conducted in the summer of 2000. The Chinook salmon was the most abundant fish in the Salmon River estuary. No rockfish were found in the Salmon River. "There is limited rockfish habitat in the estuary, most of which empties at low tide leaving only riverine freshwater flow." Fifteen different fish species were collected in the Salmon River estuary.}, pages = {18 p.}, institution = {Oregon Dept. of Fish and Wildlife. Marine Resources Division. Estuarine Habitat}, keywords = {Black rockfish = Sebastes melanops, Boiler Bay, Chinook salmon = Oncorhynchus tshawytscha, life history information, natural resource management, Rockfish = Sebastes spp., Salmon River Estuary, Seal Rock, species list, Yaquina Bay, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/p2676w099}, author = {Appy, Marcus and Collson, P. J.} } @book {36746, title = {Status review of coastal cutthroat trout from Washington, Oregon, and California}, series = {NOAA Technical Memorandum NMFS-NWFSC}, year = {1999}, note = {The Biological Review Team concluded that coastal stocks of cutthroat trout were not presently at risk of extinction. Appendix 1-A gives the known history of hatchery releases in streams and lakes.}, month = {1999}, publisher = {Northwest Fisheries Science Center}, organization = {Northwest Fisheries Science Center}, address = {[Seattle, Wash.]}, keywords = {Alsea Fish Hatchery, Alsea River, Chetco River, Coos Bay, Coos River, Coquille River, cutthroat trout = Oncorhynchus clarki, Devils Lake, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, history, Kilchis River, life history information, Miami River, Millicoma River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Rogue River, Salmon River, salmonid species, Sand Creek, Siltcoos Lake, Siuslaw River, Smith River, statistics, Tahkenitch Lake, Tenmile Creek, Tillamook River, Trask River, Umpqua River, Wilson River, Yachats River, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3066}, author = {Johnson, Orlay W. and Ruckelshaus, Mary H. and Grant, W. Stewart and Waknitz, F. William and Garrett, Ann M. and Bryant, Gregory J. and Neely, Kathleen and Hard, Jeffrey J. and Northwest Fisheries Science Center (U.S.),} } @proceedings {36456, title = {Status of coastal cutthroat trout in Oregon}, year = {1998}, month = {1997}, pages = {p.57-67}, publisher = {Oregon Chapter of the American Fisheries Society}, edition = {Corvallis, Or.}, address = {Reedsport, OR}, keywords = {biological, catch statistics, cutthroat trout = Oncorhynchus clarki, fishes, hatchery salmonids, life history information, population biology, population count, salmonids, Sixes River}, author = {Hooton, Robert M.}, editor = {Hall, James D. and Bisson, Peter A. and Gresswell, Robert E} } @article {12361, title = {Status review of chinook salmon from Washington, Idaho, Oregon, and California}, volume = {no.35}, year = {1998}, note = {The team studying Chinook salmon felt that for the Oregon Coast this species is not in danger of extinction, nor thought to become extinct "in the forseeable future" (p.249). Appendix D gives the known history of hatchery releases. }, pages = {443 p.}, institution = {U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service}, address = {[Seattle, Wash.] }, keywords = {Alsea River, Chinook salmon = Oncorhynchus tshawytscha, Coquille River, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, historical, Kilchis River, life history information, Miami River, Millicoma Rive, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, r Coos River, Salmon River, salmonid species, Siletz River, Siuslaw River, statistics, Tillamook River, Trask River, Umpqua River, Wilson River, Yachats River, Yaquina River}, url = {https://repository.library.noaa.gov/view/noaa/3034}, author = {Myers, James M. and Kope, Robert G. and Bryant, Gregory J. and Teel, David; and Lierheimer, Lisa J. and Wainwright, Thomas C. and Grant, W. Stewart and Waknitz, F. William and Neely, Kathleen and Lindley, Steven T. and Waples, Robin S.} } @book {12401, title = {Status of coastal cutthroat trout in Oregon}, series = {Information Reports / Fish Division, Oregon Department of Fish and Wildlife}, number = {no.97-2}, year = {1997}, month = {1997}, publisher = {Oregon Dept. of Fish and Wildlife}, organization = {Oregon Dept. of Fish and Wildlife}, address = {Portland, Or.}, keywords = {biological, catch statistics, cutthroat trout = Oncorhynchus clarki, fishes, hatchery salmonids, life history information, population biology, population count, Salmon River, salmonids}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A18470}, author = {Hooton, Robert M.} } @article {12446, title = {Status review of coho salmon from Washington, Oregon, and California}, volume = {no.24}, year = {1995}, note = {The Biological Review Team concluded that "coho salmon in this ESU are not at immediate risk of extinction but are likely to become endangered in the future if present trends continue." The Team noted that "spawning escapements have declined substantially during this century and may now be at less than 5\% of their abundance in the early 1900s." (p.128) }, pages = {258 p.}, institution = {U.S. Dept. of Commerce, National Oceanic and Atmoospheric Administration, National Marine Fisheries Service, Northwest Fisheries Science Center }, address = {Seattle, Wash.}, keywords = {Coho salmon = Oncorhynchus kisutch, Coos River, Coquille River, endangered species, environmental policy and law, general ecosystem description, genetics, hatcheries, historical, life history information, Miami River, natural resource management, Necanicum River, Nehalem River, Nestucca River, population biology, population count, Salmon River, salmonid species, Siletz River, Siuslaw River, statistics, Tillamook River, Umpqua River, Wilson River, Yaquina River}, url = {https://www.nwfsc.noaa.gov/assets/25/5585_06172004_123333_coho.pdf}, author = {Weitcamp, Laurie A. and Wainwright, Thomas C. and Bryant, Gregory J. and Milner, George B. and Teel, David J. and Kope, Robert G. and Waples, Robin S.} } @article {12516, title = {Seasonal changes in habitat use by juvenile coho salmon (Oncorhynchus kisutch) in Oregon coastal streams}, journal = {Canadian Journal of Fisheries and Aquatic Sciences}, volume = {49}, number = {4}, year = {1992}, month = {1992}, pages = {783-789}, keywords = {Coho salmon = Oncorhynchus kisutch, feeding behavior, habitats, life history information}, isbn = {0706-652X}, author = {Nickelson, Thomas E. and Rodgers, Jeffrey D. and Johnson, Steven L. and Solazzi, Mario F.} } @booklet {12581, title = {Chinook salmon populations in Oregon coastal river basins : description of life histories and assessment of recent trends in run strengths}, year = {1989}, note = {"This is a reprint of Oregon Department of Fish and Wildlife Information Reports 88-1, with the same title. The Addendum, pages vii-xx, was prepared for this edition." -- p.4 of cover." Nice life history data. Estimates catch, run strength, population size, run timing.}, publisher = {Oregon State University Extension Service}, address = {Corvallis, Or.}, keywords = {age composition, Alsea River, Chinook salmon = Oncorhynchus tshawytscha, commercial fisheries - salmon, Coos Rive, fecundity, geographic distribution, hatcheries, juvenile fish, life history information, mathematical modeling, Nehalem River, Nestucca River, population count, r Chetco River, r Coquille River, recreational fisheries - salmon, Rogue River, Salmon River, Siletz River, Siuslaw River, Sixes Rive, size composition, temporal distribution, Tillamook Bay, Umpqua River, Winchester Dam, Yachats River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/open_educational_resources/8910jv041}, author = {Nicholas, Jay W. and Hankin, David G. and Oregon State University. Extension Service and Oregon. Fish Division and Oregon. Dept. of Fish and Wildlife Research and Development Section,} } @article {12606, title = {Species profiles : life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest) : ghost shrimp and blue mud shrimp}, volume = {no. 82-11.93}, year = {1989}, note = {This is a classic overview of the biology and life history of ghost shrimp and mud shrimp in the Pacific Northwest, although the heavily parasitized mud shrimp may soon become extinct in Oregon estuaries. Good bibliography, if a bit dated. Map, charts, line drawings.}, pages = {14 p.}, keywords = {Alsea Bay, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos Bay, Coquille Bay, crustaceans, fecundity, general, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), growth, life history information, Mud shrimp = Upogebia pugettensis, Nehalem Bay, Nestucca Bay, Netarts Bay, recreational fisheries - shellfish, reproductive behavior, Rogue River estuary, Salmon River Estuary, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://apps.dtic.mil/dtic/tr/fulltext/u2/a206132.pdf}, author = {Hornig, Susanna and Sterling, Anita and U.S.National Wetlands Research Center and Stanley D. (Stanley DeWitt) Smith and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @article {12601, title = {Species Profiles : Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Northwest) : English Sole}, volume = {no. 82-11.101.}, year = {1989}, note = {Estuaries serve as nurseries for young English sole, although adult fish migrate to the ocean. This is a classic overview of the biology and life history of English sole in the Pacific Northwest. Good bibliography, if a bit dated.Map, charts, line drawings.}, keywords = {Alsea Bay, commercial fisheries, Coos Bay, Coquille Bay, English sole = Parophrys vetulus taxonomy, fecundity, growth, juvenile fish, life history information, Nestucca Bay, Netarts Bay, recreational fisheries, reproductive behavior, Salmon River Estuary, Sand Lake, Siletz Bay, Siuslaw Bay, Tillamook Bay, Umpqua River estuary, Winchester Bay, Yaquina Bay}, url = {https://tinyurl.com/qogv2ul}, author = {Lassuy, Dennis R. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @book {12616, title = {Chinook salmon populations in Oregon coastal river basins : description of life histories and assessment of recent trends in run strengths}, series = {Information Reports (Oregon. Fish Division) }, volume = {no.88-1}, year = {1988}, publisher = {Oregon Dept. of Fish and Wildlife, Research and Development Section,}, organization = {Oregon Dept. of Fish and Wildlife, Research and Development Section,}, chapter = {359 pp.}, address = {Portland, Or}, keywords = {age composition, Alsea River, Chetco River, Chinook salmon = Oncorhynchus tshawytscha, commercial fisheries - salmon, Coos River, Coquille River, fecundity, geographic distribution, hatcheries, juvenile fish, life history information, mathematical modeling, Nehalem River, Nestucca River, population count, recreational fisheries - salmon, Rogue River, Salmon River, Siletz River, Siuslaw River, Sixes River, size composition, temporal distribution, Tillamook Bay, Umpqua River, Winchester Dam, Yachats River, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl\%3A35565}, author = {Nicholas, Jay W. and Hankin, David G. and Oregon State University. Extension Service and Oregon. Fish Division and Oregon. Dept. of Fish and Wildlife. Research and Development Section,} } @book {12631, title = {Species Profiles : Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Northwest). Chum Salmon}, series = {Biological report (Washington, D.C.)}, number = {no.82-11.81}, year = {1988}, month = {1988}, publisher = {U.S. Fish and Wildlife Service; Coastal Ecology Group}, organization = {U.S. Fish and Wildlife Service; Coastal Ecology Group}, address = {Washington, D.C.; Vicksburg, Miss.}, keywords = {chum salmon = Oncorhynchus keta, life history information}, url = {https://archive.org/stream/DTIC_ADA196467/DTIC_ADA196467_djvu.txt}, author = {Pauley, Gilbert B. and Bowers, Karen L. and Thomas, G. L. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @book {12661, title = {Species Profiles : Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Northwest) : Steelhead Trout}, series = {Biological report (Washington, D.C.)}, number = {no.82 (11.62)}, year = {1986}, month = {1986}, publisher = {U.S. Fish and Wildlife Service; Coastal Ecology Group}, organization = {U.S. Fish and Wildlife Service; Coastal Ecology Group}, address = {Washington, D.C.; Vicksburg, Miss.}, keywords = {Coquille River, geographic distribution, habitats, life history information, Nehalem River, Nestucca River, Rogue River, Siletz River, Siuslaw River, Smith River, steelhead trout = Oncorhynchus mykiss, taxonomy, turbidity, Umpqua River, water quality, water temperature}, url = {https://apps.dtic.mil/dtic/tr/fulltext/u2/a181589.pdf}, author = {Pauley, Gilbert B. and Bortz, Bruce M. and Shepherd, Michael F. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and U.S.National Wetlands Research Center} } @book {24756, title = {Species profiles: life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): coho salmon}, series = {Biological Report (Washington, D.C.)}, volume = {no.82 (11.48)}, year = {1986}, note = {This is a classic overview of the biology and life history of coho salmon in the Pacific Northwest. Good bibliography, if dated.Map, charts, line drawings.}, month = {1986}, pages = {18 p.}, publisher = {U.S. Fish and Wildlife Service; U.S. Army Engineer Waterways Experiment Station}, organization = {U.S. Fish and Wildlife Service; U.S. Army Engineer Waterways Experiment Station}, address = {Washington, D.C.; Vicksburg, Miss.}, keywords = {Alsea River, Coho salmon = Oncorhynchus kisutch, Coquille River, geographic distribution, habitats, life history information, Nehalem River, Nestucca River, North Umpqua River, Rogue River, Siletz River, Siuslaw River, Smith River, South Umpqua River, taxonomy, Trask River, Umpqua River, water quality, water temperature}, url = {https://archive.org/details/DTIC_ADA172613}, author = {Laufle, Jeffrey C. and La Touche, Yves David. and Pauley, Gilbert B. and Shepard, Michael F. and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group, and National Coastal Ecosystems Team (U.S.),} } @article {12666, title = {Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Northwest) : Dungeness Crab}, volume = {no. 82(11.63)}, year = {1986}, note = {This is a classic overview of the biology and life history of the Dungeness crab in the Pacific Northwest. Good bibliography, if dated.Map, charts, line drawings.}, pages = {20 p.}, institution = {U.S. Fish and Wildlife Service}, address = {Washington, D.C.}, keywords = {Alsea Bay, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos Bay, Coquille Bay, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), fecundity, general, growth, life history information, Nehalem Bay, Nestucca Bay, Netarts Bay, recreational fisheries - shellfish, reproductive behavior, Rogue River estuary, Salmon River Estuary, Sand Lake, Siletz Bay, Siuslaw Bay, taxonomy, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://apps.dtic.mil/dtic/tr/fulltext/u2/a181590.pdf}, author = {Pauley, Gilbert B. and Armstrong, David A. and Heun, Thomas W.} } @article {12681, title = {The ecology of eelgrass meadows of the Pacific Northwest: A community profile}, volume = {no.84/24}, year = {1984}, note = {Table 2 shows the Salmon River as having a "moderate percent of eelgrass." (p.7)}, institution = {United States Fish and Wildlife Service}, keywords = {aquatic vegetation, biological, community ecology, dredging, ecological values, eelgrass=Zostera japonica, eelgrass=Zostera marina, human impacts, life history information, natural resource management, Phyllospadix species, salinity, waste disposal, water pollution, water temperature}, url = {https://digitalmedia.fws.gov/digital/api/collection/document/id/1734/download}, author = {Phillips, Ronald C. and U.S. National Coastal Ecosystems Team, and U.S. Army. Corps of Engineers,} } @book {12746, title = {Species Profiles : Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Northwest) : Chinook Salmon}, series = {FWS/OBS}, number = {no.82 (11.6)}, year = {1983}, note = {Good bibliography.}, month = {1983}, publisher = {U.S. Dept. of the Interior, U.S. Fish and Wildlife Service}, organization = {U.S. Dept. of the Interior, U.S. Fish and Wildlife Service}, address = {Washington, D.C.}, keywords = {Chinook salmon = Oncorhynchus tshawytscha, Coos River, Coquille River, geographic distribution, habitats, life history information, Rogue River, Siletz River, Siuslaw River, taxonomy, turbidity, Umpqua River, water quality, water temperature, Yaquina River}, url = {https://permanent.access.gpo.gov/lps63457/0097.pdf}, author = {Beauchamp, David A. and Shepard, Michael F. and Pauley, Gilbert B. and U.S. Fish and Wildlife Service. Division of Biological Services, and U.S. National Coastal Ecosystems Team, and U.S. Army Engineer Waterways Experiment Station. Coastal Ecology Group,} } @article {12771, title = {Phenotypic differences among stocks of hatchery and wild coho salmon, Oncorhynchus kisutch, in Oregon, Washington, and California}, journal = {Fishery bulletin}, volume = {80}, number = {1}, year = {1982}, month = {1982}, pages = {p.105-119}, keywords = {Alsea River, Beaver Creek, Coho salmon = Oncorhynchus kisutch, Columbia River, Coquille River, genetics, hatchery salmonids, life history information, Nehalem River, Nestucca River, North Nehalem River, physiology, Rogue River, Salmon River, Siletz River, Smith River, Tenmile Lakes, Trask River, Umpqua River, wild salmonids}, url = {https://spo.nmfs.noaa.gov/sites/default/files/pdf-content/1982/801/hjort.pdf}, author = {Hjort, Randy Carl and Schreck, Carl B.} } @mastersthesis {12836, title = {Phenotypic Comparison of Hatchery and Wild Coho Salmon (Oncorhynchus kisutch) in Oregon, Washington, and California}, year = {1979}, note = {"Phenotypic similarities of coho salmon (Oncorhynchus kisutch) stocks from Oregon, Washington, and California were compared using agglomerative and divisive cluster analyses. The phenotypic characters evaluated included the following: 1) the isozyme gene frequencies of transferrin and phosphoglucose isomerase; 2) the life history characters time of peak spawning and proportion of females in the population; and 3) the morphological characters scales in the lateral series, scales above the lateral line, anal rays, gill rakers, branchiostegal rays and vertebrae." (from the Abstract) }, pages = {50 pp,}, school = {Oregon State University}, type = {Masters Thesis}, edition = {M. S.}, chapter = {Dept. of Fisheries and Wildlife}, address = {Corvallis, Or.}, keywords = {Alsea River, Beaver Creek, Coho salmon = Oncorhynchus kisutch, Columbia River, Coquille River, genetics, hatchery salmonids, life history information, Nehalem River, Nestucca River, North Nehalem River, physiology, Rogue River, Salmon River, Siletz River, Smith River, Tenmile Lakes, theses, Trask River, Umpqua River, wild salmonids}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/tm70mx49x}, author = {Hjort, Randy Carl} } @article {12846, title = {Subtidal clam populations: Distribution, abundance, and ecology}, volume = {no.79-002}, year = {1979}, note = {Good maps}, month = {[1979]}, institution = {Oregon State University Sea Grant}, address = {Corvallis, Or.}, keywords = {abundance, aquatic invertebrates, aquatic vegetation, biological, bivalves, blue mud shrimp=Upogebia pugettensis, brown algae, butter clam=Saxidomus giganteus, cockle clam=Clinocardium nuttallii, commercial fisheries, community ecology, crustaceans, decapods, developmental stages, economics, Enteromorpha species eelgrass=Zostera marina, Fucus species, gaper clam=Tresus capax, general ecosystem description, geographical distribution, Ghost shrimp = Neotrypaea californiensis (Callianassa californiensis), green algae, historical, life history information, littleneck clam=Leukoma staminea, molluscs, population biology, recreational fisheries - shellfish, reproductive behavior, Salmon River estuary, sediments, softshell clam=Mya arenaria, temporal distribution, Ulva species, wetland vegetation}, url = {https://repository.library.noaa.gov/view/noaa/39128}, author = {Hancock, D. R. and Gaumer, Thomas F. and Willeke, G. B. and Robart, G. P. and Flynn, J.} } @article {24236, title = {The Dungeness Crab Fishery in Oregon Estuaries}, year = {1977}, note = {"Oregon{\textquoteright}s estuaries are focal points in an important recreational and commercial fishery for Dungeness crab. This report describes crabbing in Oregon{\textquoteright}s estuaries and includes brief notes on crab biology, catch statistics, major fishing areas, fishing regulations, problems, and proposed solutions." (Introduction) Internal discussion paper.}, pages = {13 p.}, keywords = {abundance, Alsea Bay, catch statistics, Chetco River estuary, Columbia River estuary, commercial fisheries - shellfish, Coos Bay, Coquille Bay, crustaceans, Dungeness crab = Metacarcinus magister (Cancer magister), life history information, natural resource management, Nehalem Bay, Nestucca Bay, Netarts Bay, recreational fisheries - shellfish, Rogue River estuary, Salmon River Estuary, Sand Lake, shellfish, Siletz Bay, Siuslaw Bay, Tillamook Bay, Umpqua River estuary, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/4f16c371f}, author = {Oregon. Dept. of Fish and Wildlife. Marine Region,} } @mastersthesis {13096, title = {Productivity, survival, and population status of river otter in western Oregon}, year = {1974}, note = {Major Professor: Howard M. Wight. Regarding trapping of river otters, the author writes, "Specific areas where the harvest seemed to be concentrated were western Douglas and Lane Counties, especially from the lower portions of the Umpqua and Smith Rivers, Tenmile Lake, Tahkenitch Lake, and Siltcoos Lake; western Tillamook County in the lower Tillamook, Trask, Wilson, and Nehalem Rivers and their tributaries; and southern Klamath County in Klamath Lake and Klamath River." (p.51)}, month = {1974}, pages = {62 p.}, school = {Oregon State University }, type = {Masters Thesis}, edition = {M. S.}, chapter = {Dept. of Fisheries and Wildlife, Wildlife Management}, address = {Corvallis, OR}, keywords = {general, life history information, Lower Umpqua River, North American river otter = Lontra canadensis, r Nehalem River, Siltcoos Lake, Smith River, Tahkenitch Lake, theses, Tillamook River, Trask River, Wilson Rive}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/rb68xg30f}, author = {Tabor, James Eldon} } @article {13186, title = {Clam-Abalone Spawning and Rearing Annual Report July 1, 1971 to June 30, 1972}, year = {1972}, month = {July_1971}, institution = {U.S. Department of Commerce. National Oceanic and Atmospheric Administration}, address = {Salem, Or.}, keywords = {algal species, Alsea Bay, aquaculture, aquatic invertebrates, aquatic vegetation, biological, bivalves, butter clam=Saxidomus giganteus, developmental stages, growth, Isochrysis species, life history information, molluscs, Monochrysis species, Netarts Bay, Pacific littleneck=Leukoma staminea, physiology, Red abalone=Haliotis rufescens, reproductive behavior, salinity, Salmon River Estuary, Tillamook Bay, water temperature, Yaquina Bay}, url = {https://ir.library.oregonstate.edu/concern/technical_reports/rr171z04d}, author = {Lukas, Gerald T. and Oregon. Fish Commission,} } @book {13166, title = {Fish and Wildlife Resources of the Middle Coast Basin, Oregon, and Their Water Requirements (Revised)}, year = {1972}, note = {Good general coverage of the region. Recommended minimum flows, stream temperature data, fishing, hatchery releases, lists dams and falls. Black and white photographs, selected species lists.}, month = {1972}, publisher = {Oregon State Game Commission}, organization = {Oregon State Game Commission}, address = {Portland, OR}, keywords = {abundance, Alsea River, biological, birds, chinook salmon=Oncorhynchus tshawytscha, chum salmon=Oncorhynchus keta, coastal cutthroat trout=Oncorhynchus clarki clarki, coho salmon=Oncorhynchus kisutch, commercial fisheries, ecological values, economics, fishes, geographical distribution, historical, human impacts, hydrology, life history information, Pacific salmonids=Oncorhynchus species, physical modifications, recreational fisheries, reproductive behavior, Salmon River, Siletz River, Siltcoos Lake, Siuslaw River, steelhead=Oncorhynchus mykiss, Tahkenitch Lake, temporal distribution, terrestrial mammals, Yachats River, Yaquina River}, url = {https://digital.osl.state.or.us/islandora/object/osl:18002}, author = {Smith, Allan K. and Lauman, Jim E. and Oregon. Game Commission and Oregon. State Water Resources Board} } @article {13261, title = {Fish and wildlife resources of the Middle Coast Basin, Oregon, and their water use requirements}, year = {1965}, note = {"April, 1965." Assesses fish and wildlife resources (primarily fish) of the Mid-Coast Basin. Makes recommendations on minimum stream flows needed to sustain fish. Includes reports on the stream cleanup / log jam removal program of the mid-1960s. Includes list of dams and waterfalls. Two folded maps show known salmonid spawning areas.}, address = {Portland, Or.}, keywords = {abundance, Alsea River, birds, Chinook salmon = Oncorhynchus tshawytscha, chum salmon = Oncorhynchus keta, Coastal cutthroat trout = Oncorhynchus clarki clarki, Coho salmon = Oncorhynchus kisutch, commercial fisheries, ecological values, economics, fishes, geographical distribution, historical, human impacts, hydrology, life history information, Pacific salmonids=Oncorhynchus species, physical modifications, recreational fisheries, reproductive behavior, Salmon River, Siletz River, Siltcoos Lake, Siuslaw River, steelhead trout = Oncorhynchus mykiss, Tahkenitch Lake, temporal distribution, terrestrial mammals, Yachats River, Yaquina River}, url = {https://ir.library.oregonstate.edu/concern/defaults/s7526d23w}, author = {Hutchinson, James M.} } @mastersthesis {13326, title = {Scale analyses of steelhead trout: Salmo gairdnerii gairdnerii Richardson, from various coastal watersheds of Oregon}, year = {1959}, note = {Thesis (M.S.). Scales from steelhead trout from 14 different Oregon coastal streams were examined. Differences in life histories between northern and southern populations were noted. The Coquille River population was considered "transitional" between the northern and southern groups. }, pages = {189 p.}, school = {Oregon State College }, type = {Masters Thesis}, edition = {M. S.}, chapter = {Dept. of Fish and Game Management, Fisheries}, address = {Corvallis, Or.}, keywords = {Chetco River, Coos Bay, Coos River, Coquille River, life history information, Necanicum River, Nehalem River, Nestucca River, Salmon River, Sand Creek, Sand Lake Estuary, Siletz River, Sixes River, steelhead trout = Oncorhynchus mykiss, theses, Trask River, Wilson River, Winchuck River}, url = {https://ir.library.oregonstate.edu/concern/graduate_thesis_or_dissertations/3j333548n}, author = {Bali, John Merton} }