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Book Chapter
Ruggiero, Peter, Cheryl A. Brown, Paul D. Komar, Jonathan C. Allan, Deborah A. Reusser, and Henry Lee II. "Impacts of climate change on Oregon’s coasts and estuaries." In Oregon Climate Assessment Report, edited by Kathie Dello and Philip W. Mote, p.211-268. Corvallis, Or.: Oregon State University. College of Oceanic and Atmospheric Sciences. Oregon Climate Change Research Institute,, 2010.
Conference Proceedings
Yamada, Sylvia B., Chris Hunt, and N. Richmond. The arrival of the European green crab, Carcinus maenas, in Oregon estuaries In Marine Bioinvasions. Proceedings of the First National Conference, January 24-27, 1999, Edited by J. Pederson. Massachusetts Institute of Technology, Cambridge MA: Massachusetts Institute of Technology, Cambridge MA, 1999.
Jones, David S., Ian A. Fleming, and Lisa K. McLaughlin. Feeding ecology of cutthroat trout in the Salmon River Estuary, Oregon In Coastal Cutthroat Trout Symposium , Edited by Patrick J. Connolly, (Thomas Herbert) T. H. Williams, Robert E. Gresswell and American Fisheries Society. Oregon Chapter.. Port Townsend, Wash.: Oregon Chapter of the American Fisheries Society, 2005.
Journal Article
Thom, Ronald M.. "Accretion rates of low intertidal salt marshes in the Pacific Northwest." Wetlands 12 (1992): p.147-156.
Hawkes, A. D., B. P. Horton, Alan R. Nelson, C. H. Vane, and Y. Sawai. "Coastal subsidence in Oregon, USA, during the giant Cascadia earthquake of A.D. 1700." Quaternary Science Reviews 30 (2011): p.364-376.
Davis, Melanie J., James Anthony, Eric J. Ward, Julie Firman, and Christopher Lorion. "Coherence among Oregon Coast coho salmon populations highlights increasing relative importance of marine conditions for productivity." Fisheries Oceanography 32 (2023): p.293-310.
Gray, Ayesha, Charles A. Simenstad, Daniel L. Bottom, and Trevan J. Cornwell. "Contrasting functional performance of juvenile salmon habitat in recovering wetlands in the Salmon River estuary, Oregon, U.S.A." Restoration Ecology 10 (2002): p.514-526.
Jones, Kim K., Trevan J. Cornwell, Daniel L. Bottom, Lance A. Campbell, and Staci Stein. "The contribution of estuary-resident life histories to the return of adult Oncorhynchus kisutch." Journal of Fish Biology 85, no. 1 (2014): p.52-80.
Gladson, Jim. "Estuaries." Oregon wildlife 36 (1981): p.3-8.
Nelson, Alan R., Andrew C. Asquith, and Wendy C. Grant. "Great earthquakes and tsunamis of the past 2000 years at the Salmon River Estuary, Central Oregon Coast, USA." Bulletin of the Seismological Society of America 94 (2004): p.1276-1292.
Bayer, Range D.. "Harlequin duck records mostly from Lincoln County, Oregon." Journal of Oregon Ornithology 3 (1994): p.243-260.
Jackson, Philip L.. "Managing Oregon's estuarine resource lands." Journal of Soil and Water Conservation 46 (1991): 23-26.
de Angelis, Marie A., and Marvin D. Lilley. "Methane in surface waters of Oregon estuaries and rivers." Limnology and oceanography 32 (1987): p.716-722.
Bottom, Daniel L., Kim K. Jones, Trevan J. Cornwell, Ayesha Gray, and Charles A. Simenstad. "Patterns of Chinook salmon migration and residency in the Salmon River estuary (Oregon)." Estuarine, Coastal and Shelf Science 64 (2005): 79-93.
Tollefson, Roger. "Present state of bay clams in Oregon." Research Briefs. Fish Commission of Oregon 1 (1948): 3-9.
Flitcroft, R. L., I. Arismendi, and M. V. Santelmann. "A review of habitat connectivity research for Pacific salmon in marine, estuary, and freshwater environments." Journal of the American Water Resources Association 55 (2019): p.430-441.
Kemp, Andrew C., Niamh Cahill, Simon E. Engelhart, Andrea D. Hawkes, and Kelin Wang. "Revising estimates of spatially variable subsidence during the A.D. 1700 Cascadia Earthquake using a Bayesian foraminiferal transfer function." Bulletin of the Seismological Society of America 108 (2018): p.654-673.
Simenstad, Charles A., Daniel L. Bottom, and Kim Jones. "The Salmon River estuary: a case study in restoration of resilient estuarine ecosystems and Pacific salmon." ESCA bulletin / Estuarine and Coastal Sciences Association no.52 (2008): p.20-22.
Mitchell, Diane Lynne. "Salt marsh re-establishment after dike removal in the Salmon River estuary, Lincoln County, Oregon." Estuaries 4 (1981): 261.
Peterson, Curt, Kenneth Scheidegger, Paul Komar, and Wendy Niem. "Sediment composition and hydrography in six high-gradient estuaries of the Northwestern United States." Journal of sedimentary petrology 54 (1984): p.86-97.
Flitcroft, Rebecca, Kelly Burnett, and Kelly Christiansen. "A simple model that identifies potential effects of sea-level rise on estuarine and estuary-ecotone habitat locations for salmonids in Oregon, USA." Environmental Management 52 (2013): p.196-208.
Peck, Erin K., and Robert A. Wheatcroft. "Spatiotemporal variation in Oregon salt marsh expansion and contraction." Estuarine, Coastal and Shelf Science 273 (2022): 9 p.
Hering, David K., Daniel L. Bottom, Earl F. Prentice, Kim K. Jones, and Ian A. Fleming. "Tidal movements and residency of subyearling Chinook salmon (Oncorhynchus tshawytscha) in an Oregon salt marsh channel." Canadian journal of fisheries and aquatic sciences 67 (2010): p.524-533.

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